Browse Element(s) Details


OsAffx.14084.1.S1_x_at

Description tigr:9632.m03064
TID=OsAffx.14084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutamine-rich protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3216011/11hypothetical protein
LOC_Os04g321903/11Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g322502/11hypothetical protein
LOC_Os02g336201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g470001/11hypothetical protein
LOC_Os04g322601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32120OsAffx.14081.1.S1_at11/114+19085914..19086426hypothetical protein
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14084.1.S1_x_at--423--1231Chr04:19104747..19104771 (25 bp)
AGTTCGAGAAGCTGGTGCTGACCTA
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--541--5894Chr04:19144501..19144525 (25 bp)
GAGCGGCTCATGGTGGAGAACCTCC
LOC_Os04g32260
OsAffx.14084.1.S1_x_at--121--8633Chr04:19139288..19139312 (25 bp)
TGGTGGAGAACCTCCTGCTCGCCGA
LOC_Os04g32250
OsAffx.14084.1.S1_x_at--543--1152Chr04:19114315..19114339 (25 bp)
AGTCGGAGCACGTCAGCGCCCTCGT
LOC_Os04g32190
OsAffx.14084.1.S1_x_at--581--4132Chr04:19104951..19104975 (25 bp)
CGCTGCAGCGGCAACGGATGCAGCA
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--462--1492Chr06:24885199..24885319 (24 bp)
AGCAAGCCCTGCAGCGGCGGCAACT
NONE
OsAffx.14084.1.S1_x_at--665--8231Chr04:19104996..19105020 (25 bp)
GGCAACTCTTCCTGGAGCAGCAGCA
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--681--1492Chr04:19105068..19105092 (25 bp)
AGCAACAGATGATGGCAGCGCTGCA
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--646--852Chr04:19105079..19105103 (25 bp)
ATGGCAGCGCTGCAACAGCAGCAGC
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--506--1511Chr04:19105098..19105122 (25 bp)
AGCAGCTGGCGATCTTGTTCCACGA
LOC_Os04g32160
OsAffx.14084.1.S1_x_at--880--8371Chr04:19105105..19105129 (25 bp)
GGCGATCTTGTTCCACGACCAGCCG
LOC_Os04g32160
Target Sequence 
AGTTCGAGAAGCTGGTGCTGACCTACAACGTCGCCGTCCGGAAGTCCGGCGCCGGCGCCGCCCGCGGCGAGGAGCGGCTC
ATGGTGGAGAACCTCCTGCTCGCCGACGAGCAGCGCAAGTCGGAGCACGTCAGCGCCCTCGTCCGGCAGCAGCAGCAGCA
GCTGGTGGCGCTGCAGAAGCAGCAGCAGCAGCAGGAGGAGGCGGCGCTGCAGCGGCAACGGATGCAGCAGCAGCAAGCCC
TGCAGCGGCGGCAACTCTTCCTGGAGCAGCAGCAGCAGCAAGCAGCGCTGCAGCAGCAGCTCATGCTAGAGCAGCAGCAG
CAGCAACAGATGATGGCAGCGCTGCAACAGCAGCAGCTGGCGATCTTGTTCCACGACCAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14084.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis