Browse Element(s) Details


OsAffx.3972.1.S1_at

Description tigr:9632.m03058
TID=OsAffx.3972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g321007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32120OsAffx.14081.1.S1_at11/114+19085914..19086426hypothetical protein
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3972.1.S1_at--692--10311Chr04:19079792..19079816 (25 bp)
TTTCTGTCCATTCGTTGCTTCGCTG
LOC_Os04g32100
OsAffx.3972.1.S1_at--356--10631Chr04:19079802..19079826 (25 bp)
TTCGTTGCTTCGCTGTGCTGCTCAA
LOC_Os04g32100
OsAffx.3972.1.S1_at--466--4911Chr04:19079808..19079827 (20 bp)
GCTTCGCTGTGCTGCTCAACTATAA
LOC_Os04g32100
OsAffx.3972.1.S1_at--711--4731NONE
GCTGTGCTGCTCAACTATAACCCTG
NONE
OsAffx.3972.1.S1_at--548--9111NONE
TGCTGCTCAACTATAACCCTGCTAA
NONE
OsAffx.3972.1.S1_at--151--4831NONE
GCTCAACTATAACCCTGCTAACGAA
NONE
OsAffx.3972.1.S1_at--783--1991NONE
ACTATAACCCTGCTAACGAAACTGA
NONE
OsAffx.3972.1.S1_at--1016--1791Chr04:19080372..19080396 (25 bp)
ACCCTGCTAACGAAACTGAGGCACA
LOC_Os04g32100
OsAffx.3972.1.S1_at--705--6191Chr04:19080389..19080413 (25 bp)
GAGGCACAGGAAAATGGCCGCTTAA
LOC_Os04g32100
OsAffx.3972.1.S1_at--889--8391Chr04:19080404..19080428 (25 bp)
GGCCGCTTAAAAAACCACGAGTATG
LOC_Os04g32100
OsAffx.3972.1.S1_at--982--1631Chr04:19080417..19080441 (25 bp)
ACCACGAGTATGTGTTACAAAAACA
LOC_Os04g32100
Target Sequence 
TTTCTGTCCATTCGTTGCTTCGCTGTGCTGCTCAACTATAACCCTGCTAACGAAACTGAGGCACAGGAAAATGGCCGCTT
AAAAAACCACGAGTATGTGTTACAAAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis