Browse Element(s) Details


OsAffx.23387.1.S1_at

Description tigr:9629.m02439
TID=OsAffx.23387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2517011/11hypothetical protein
LOC_Os04g321303/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25160OsAffx.23386.1.S1_at11/111+14192960..14193587Jacalin-like lectin domain containing protein
LOC_Os01g25170OsAffx.23387.1.S1_at11/111+14203265..14203860hypothetical protein
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23387.1.S1_at--676--5411Chr01:14203630..14203654 (25 bp)
GAAGCCTTGGAGAACTACCTTCAAG
LOC_Os01g25170
OsAffx.23387.1.S1_at--130--5712Chr04:19090570..19090594 (25 bp)
GACTATGGAGTGTACGCTGATGCTG
LOC_Os04g32130
OsAffx.23387.1.S1_at--555--6112Chr04:19090577..19090601 (25 bp)
GAGTGTACGCTGATGCTGTAAATGT
LOC_Os04g32130
OsAffx.23387.1.S1_at--296--692Chr04:19090658..19090682 (25 bp)
ATGAGCGAAGTCAGTCAAGAGATTT
LOC_Os04g32130
OsAffx.23387.1.S1_at--703--10251Chr01:14203496..14203520 (25 bp)
TTTGACAAACATAGAAAGGCGAGCT
LOC_Os01g25170
OsAffx.23387.1.S1_at--1073--2292Chr01:14203376..14203395 (20 bp)
AAAGGCGAGCTATTTATGCAAGGTT
NONE
OsAffx.23387.1.S1_at--71--2231Chr01:14203417..14203441 (25 bp)
ACAAGTATAGTTCCTACGGCGCCTA
LOC_Os01g25170
OsAffx.23387.1.S1_at--728--1731Chr01:14203382..14203406 (25 bp)
ACCTTCCTCCACTTGCATAAATAGC
LOC_Os01g25170
OsAffx.23387.1.S1_at--1009--9051Chr01:14203369..14203393 (25 bp)
TGCATAAATAGCTCGCCTACATCCA
LOC_Os01g25170
OsAffx.23387.1.S1_at--203--2071Chr01:14203330..14203354 (25 bp)
ACTTGCCTGTTGTGCTTGGATGTCC
LOC_Os01g25170
OsAffx.23387.1.S1_at--601--6631Chr01:14203322..14203346 (25 bp)
GTTGTGCTTGGATGTCCAGTTCTGC
LOC_Os01g25170
Target Sequence 
GAAGCCTTGGAGAACTACCTTCAAGACTATGGAGTGTACGCTGATGCTGTAAATGTTGTCTTTGATGTAGAGGAGTTACC
CAACTCACATGAGGTTCAACATGCAAATGGAAATGAGCGAAGTCAGTCAAGAGATTTGACAAACATAGAAAGGCGAGCTA
TTTATGCAAGGTTGCTTGAGAAGAGTATGAATGGAAAATTAGAAAAAGACACCACAAGTATAGTTCCTACGGCGCCTACA
TCCACCTCACCTTCCTCCACTTGCATAAATAGCTCGCCTACATCCACCTCGCCTTCCTCCACTTGCCTGTTGTGCTTGGA
TGTCCAGTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis