Browse Element(s) Details


Os.50800.1.S1_at

Description gb:AK101777.1
DB_XREF= gi:32986986
TID=Os.50800.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064N18, full insert sequence.
FL= gb:AK058653.1 gb:AK101777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3215010/11amidohydrolase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32120OsAffx.14081.1.S1_at11/114+19085914..19086426hypothetical protein
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50800.1.S1_at--59--6191Chr04:19098052..19098076 (25 bp)
GAGGAGCTCTGCACAGATTATCCAA
LOC_Os04g32150
Os.50800.1.S1_at--579--10391Chr04:19098089..19098113 (25 bp)
TTTTCGATCATATGGCTTTCTGCAA
LOC_Os04g32150
Os.50800.1.S1_at--239--10011NONE
TAGAACTATCCAGATTCCCTCAGAT
NONE
Os.50800.1.S1_at--634--1251Chr04:19098266..19098716 (25 bp)
AGATTCCCTCAGATTTACGTCAAAT
LOC_Os04g32150
Os.50800.1.S1_at--530--9871Chr04:19098716..19098740 (25 bp)
TACAGTGCGCTCTTTCGTATTTCAA
LOC_Os04g32150
Os.50800.1.S1_at--729--1551Chr04:19098771..19098795 (25 bp)
AGCTTCTTTCCCGTGTGATCTCTAG
LOC_Os04g32150
Os.50800.1.S1_at--651--3631Chr04:19099101..19099125 (25 bp)
CTTCGTTGTTCCTGAATGTGGCTAC
LOC_Os04g32150
Os.50800.1.S1_at--437--6411Chr04:19099143..19099167 (25 bp)
GATCTCTCATGTCGCCGGCAAGATA
LOC_Os04g32150
Os.50800.1.S1_at--575--2811Chr04:19099162..19099186 (25 bp)
AAGATACCTGTTTCCTCGTCAGATT
LOC_Os04g32150
Os.50800.1.S1_at--492--7351Chr04:19099210..19099234 (25 bp)
GTGACCCAACTGTTCCAAGGTGCAT
LOC_Os04g32150
Os.50800.1.S1_at--820--2711Chr04:19099354..19099378 (25 bp)
AAGCATTATTCTTTCTATTCGCTAA
LOC_Os04g32150
Target Sequence 
GAGGAGCTCTGCACAGATTATCCAAAAACTACTGTTATTTTCGATCATATGGCTTTCTGCAAGCCACCAATGAACATTGA
AGAAGAGAAGGCCTTCACTTCATTTCTAGAACTATCCAGATTCCCTCAGATTTACGTCAAATACAGTGCGCTCTTTCGTA
TTTCAAGAGAAGCATATCCATATGAGGACACATCTCAGCTTCTTTCCCGTGTGATCTCTAGCTATGGAGCGAATCGAATA
ATGTGGGGAAGTGACTTCCCCTTCGTTGTTCCTGAATGTGGCTACAAAGGGGCCAAGGAGGCGATCTCTCATGTCGCCGG
CAAGATACCTGTTTCCTCGTCAGATTTGGAATGGATCTTAGGCAAAACAGTGACCCAACTGTTCCAAGGTGCATGGGTTT
CTGCATGATAGGGGTGTCATTGGTTAGTGTAGCTTTTATTGGTCAGTAAATATCCTTGCAATGAGAGGGTGAAAAAGATT
CTTGTATGAGAGGAAAACGGCGTTATNCAGTTAAAGCATTATTCTTTCTATTCGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis