Browse Element(s) Details


OsAffx.14084.2.S1_x_at

Description tigr:9632.m03067
TID=OsAffx.14084.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3219011/11Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g321604/11hypothetical protein
LOC_Os04g322603/11hypothetical protein
LOC_Os04g322503/11hypothetical protein
LOC_Os04g322101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14084.2.S1_x_at--104--9291Chr04:19112828..19112852 (25 bp)
TCCGACGACCACACTGCAGAAGCAG
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--213--4431Chr04:19113084..19113108 (25 bp)
GCCAGGCAGCACAAGCGGAAGCAGC
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--945--2211Chr04:19113094..19113118 (25 bp)
ACAAGCGGAAGCAGCCGAACGTCGC
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--1081--4131Chr04:19113121..19113145 (25 bp)
CGCTGCAGCAGAAGATTCAGGGCTT
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--140--3971Chr04:19113289..19113313 (25 bp)
CGCGGAAGGCATGCAACCCGGACTT
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--454--651Chr04:19113299..19113323 (25 bp)
ATGCAACCCGGACTTCACGACGCAG
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--296--1834Chr04:19113318..19113342 (25 bp)
ACGCAGTTCGCCTCCGTCGAGGACG
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--965--7215Chr04:19142041..19142061 (21 bp)
GTCGAGGACGCCATCAGCAGGCTGC
LOC_Os04g32260
OsAffx.14084.2.S1_x_at--871--9651Chr04:19114165..19114186 (22 bp)
TCAGCAGGCTGCTTCGGAACGAGGA
LOC_Os04g32190
OsAffx.14084.2.S1_x_at--650--814Chr04:19139287..19139311 (25 bp)
ATGGTGGAGAACCTCCTGCTCGCCG
LOC_Os04g32250
OsAffx.14084.2.S1_x_at--544--1152Chr04:19114315..19114339 (25 bp)
AGTCGGAGCACGTCAGCGCCCTCGT
LOC_Os04g32190
Target Sequence 
TCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGTGGCGCTGCAGCGGGTGTGGCGCCTCCTCCTTCGCCGC
CGGGGATGTCGATGGTGGCGGGCCCGCGTCCCGCCAGGCAGCACAAGCGGAAGCAGCCGAACGTCGCGCCGCTGCAGCAG
AAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGCCCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGAGAA
GGCCGCAGCTGCAGACCCGGAGGAGGAGGCGCGAGCGAGGGAGCGCGCGGCAGCGGAGCAGATCGCGTACGAGGACGCGC
GGAAGGCATGCAACCCGGACTTCACGACGCAGTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTTCGGAACGAGGAG
GACGTGGTCTACGTGGAGAAGCTGGTGCTGGCCTTCAACGTCGCCGTCCGGAAGTCCGGCGCCGGCGCCGCCCGCGCCGA
GGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAGCAGCGGCAGTCGGAGCACGTCAGCGCCCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14084.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis