Browse Element(s) Details


OsAffx.21182.2.S1_x_at

Description tigr:9629.m03141
TID=OsAffx.21182.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3352011/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g250103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g322301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21182.2.S1_x_at--723--692Chr05:14397314..14397338 (25 bp)
ATGAGTTCCTCATCGACTACATTAA
LOC_Os05g25010
OsAffx.21182.2.S1_x_at--271--5831Chr01:18777771..18777964 (25 bp)
GACCGTGTTTTGATCATCGACACAT
LOC_Os01g33520
OsAffx.21182.2.S1_x_at--847--252Chr05:14397632..14397656 (25 bp)
ATATCGATTGACTGCGTGCACGAAA
LOC_Os05g25010
OsAffx.21182.2.S1_x_at--932--5091Chr01:18777643..18777667 (25 bp)
GCACGAAATCTCCAAGCGGCAGTTG
LOC_Os01g33520
OsAffx.21182.2.S1_x_at--241--5251Chr01:18777470..18777494 (25 bp)
GAATCATTGGTACCTGGCTGTCGTC
LOC_Os01g33520
OsAffx.21182.2.S1_x_at--884--8331Chr01:18777455..18777479 (25 bp)
GGCTGTCGTCCATGTTAAGCAACGC
LOC_Os01g33520
OsAffx.21182.2.S1_x_at--426--132Chr05:14397947..14397971 (25 bp)
ATTCAACTACTGGACTCATCACCTA
LOC_Os05g25010
OsAffx.21182.2.S1_x_at--585--3351Chr01:18777097..18777432 (25 bp)
CACCTAGCACCGGATTATCTTTCTA
LOC_Os01g33520
OsAffx.21182.2.S1_x_at--148--292Chr04:19130821..19130845 (25 bp)
ATAGGTCTTCATGTGGTCTCTTCAT
LOC_Os04g32230
OsAffx.21182.2.S1_x_at--649--1412Chr05:14410108..14410132 (25 bp)
AGACATCTTCAGACGCAAGCTAGCG
NONE
OsAffx.21182.2.S1_x_at--735--3111Chr01:18776875..18776899 (25 bp)
AATTTTGGTTGGCTCCACATCGAAT
LOC_Os01g33520
Target Sequence 
ATGAGTTCCTCATCGACTACATTAACACTTCACCGCCTGACCGTGTTTTGATCATCGACACATACATAATGTACCTGGAA
CATAAATACCTTGAAGAGTCACAAGCTCGCAGAAGAGTATATATGATGAAAACGTTCATCACAGGTAAAATATCGATTGA
CTGCGTGCACGAAATCTCCAAGCGGCAGTTGGAAAAGGGATATATATCAAGAATTACTAACCAAATTGCCCAGAACGAAC
AGATCTTTATCCCTATAAATAGAAATAAGAATCATTGGTACCTGGCTGTCGTCCATGTTAAGCAACGCCAGATTCAACTA
CTGGACTCATCACCTAGCACCGGATTATCTTTCTATAGGTCTTCATGTGGTCTCTTCATGCTGAAGTGCATGGAACACTG
GAATGGATCAAAGTTAACCACAAAATTTAAGCAGGGTGATATAGACATCTTCAGACGCAAGCTAGCGGCAATTTTGGTTG
GCTCCACATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21182.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis