Browse Element(s) Details


Os.8289.1.A1_at

Description gb:AK071142.1
DB_XREF= gi:32981165
TID=Os.8289.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1168H06.7 (B1168H06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081C16, full insert sequence.
FL= gb:AK071142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3351411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8289.1.A1_at--282--6531Chr01:18775190..18775214 (25 bp)
GATTTGTTATAGATGGCTGTGGCCT
LOC_Os01g33514
Os.8289.1.A1_at--147--10831Chr01:18775283..18775307 (25 bp)
TTGTGCTCGGTTTTTGTACTTGCAT
LOC_Os01g33514
Os.8289.1.A1_at--1032--2051Chr01:18775300..18775324 (25 bp)
ACTTGCATAGCAGATCCTTGATATT
LOC_Os01g33514
Os.8289.1.A1_at--610--6531Chr01:18775339..18775363 (25 bp)
GATTTCCTTACATGCCACTATGAGT
LOC_Os01g33514
Os.8289.1.A1_at--842--4851Chr01:18775372..18775396 (25 bp)
GCTAGCTGTTCAGGTTATTTTTCCA
LOC_Os01g33514
Os.8289.1.A1_at--871--1111Chr01:18775403..18775427 (25 bp)
AGTGACTGCAACGTCATTTGACTGA
LOC_Os01g33514
Os.8289.1.A1_at--696--3391Chr01:18775443..18775467 (25 bp)
CAGCTAGTTGCTTGCCTATTGCAGC
LOC_Os01g33514
Os.8289.1.A1_at--435--9191Chr01:18775455..18775479 (25 bp)
TGCCTATTGCAGCTGTTCTGGCAAT
LOC_Os01g33514
Os.8289.1.A1_at--398--651Chr01:18775596..18775620 (25 bp)
ATGCATGTGCTGATCCTAGAGAGAA
LOC_Os01g33514
Os.8289.1.A1_at--468--8751Chr01:18775631..18775655 (25 bp)
TGTAGCCTACTTTTGATGATTTTCG
LOC_Os01g33514
Os.8289.1.A1_at--1069--6511Chr01:18775648..18775672 (25 bp)
GATTTTCGTTTTCTGCTGGTTACTT
LOC_Os01g33514
Target Sequence 
GATTTGTTATAGATGGCTGTGGCCTGTGAAAGTATGAAAACTTTCAGAAAATAGTAGATAGCTGTTTAATTTGCTTTATT
ATTTAATTTATTTTTGTGCTCGGTTTTTGTACTTGCATAGCAGATCCTTGATATTTTTGAAATTGTAATGATTTCCTTAC
ATGCCACTATGAGTTAATTGTTGCTAGCTGTTCAGGTTATTTTTCCAAGATGAAGTGACTGCAACGTCATTTGACTGAAT
TGGAAGGATATTGCAGCTAGTTGCTTGCCTATTGCAGCTGTTCTGGCAATATAGAGTGCAATTACCAGGATGTTTTTGGC
AGAAGCTGCATATTTTTGTTGTAGGTGCAATATTCTTCTGAAGATACAAAGCTTCATATTTTGCTGAAGATAGACAAGTT
GTACAGATGCATGTGCTGATCCTAGAGAGAAATTGTGTTTGTGTAGCCTACTTTTGATGATTTTCGTTTTCTGCTGGTTA
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8289.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis