Browse Element(s) Details


OsAffx.3973.1.S1_at

Description tigr:9632.m03062
TID=OsAffx.3973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3214011/11microneme protein Sm70, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32120OsAffx.14081.1.S1_at11/114+19085914..19086426hypothetical protein
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3973.1.S1_at--792--6311Chr04:19093464..19093488 (25 bp)
GATGACTCCGACCTGCCAGCTGATG
LOC_Os04g32140
OsAffx.3973.1.S1_at--885--1991Chr04:19093460..19093484 (25 bp)
ACTCCGACCTGCCAGCTGATGGTTG
LOC_Os04g32140
OsAffx.3973.1.S1_at--244--5831Chr04:19093455..19093479 (25 bp)
GACCTGCCAGCTGATGGTTGCGTCG
LOC_Os04g32140
OsAffx.3973.1.S1_at--840--4411Chr04:19093450..19093474 (25 bp)
GCCAGCTGATGGTTGCGTCGTCCCT
LOC_Os04g32140
OsAffx.3973.1.S1_at--539--8371Chr04:19093122..19093146 (25 bp)
GGCGTCCACAACTTGGAGCAGAAAC
LOC_Os04g32140
OsAffx.3973.1.S1_at--268--2151Chr04:19093115..19093139 (25 bp)
ACAACTTGGAGCAGAAACCGGACAA
LOC_Os04g32140
OsAffx.3973.1.S1_at--515--2611Chr04:19093100..19093124 (25 bp)
AACCGGACAAAGACATCTCCGCCAA
LOC_Os04g32140
OsAffx.3973.1.S1_at--937--2191Chr04:19093094..19093118 (25 bp)
ACAAAGACATCTCCGCCAACTTGGA
LOC_Os04g32140
OsAffx.3973.1.S1_at--740--5111Chr04:19093063..19093087 (25 bp)
GCACATGGATGACATTGAGCAGCTT
LOC_Os04g32140
OsAffx.3973.1.S1_at--42--691Chr04:19093055..19093079 (25 bp)
ATGACATTGAGCAGCTTGTCGGTGG
LOC_Os04g32140
OsAffx.3973.1.S1_at--818--711Chr04:19093007..19093031 (25 bp)
ATGATGCTGGTGTAGCTGCCAGAGA
LOC_Os04g32140
Target Sequence 
GATGACTCCGACCTGCCAGCTGATGGTTGCGTCGTCCCTGACTCCAAGGACGAGGAAAGTGGTGGTGTCCACGACTCTGA
GCTGCCACCCGAAGGCTGCGTCGTCCCTGACTCCGAGGACAAGGAAAGTGGTGGTGTCCACGACTCCGAGCTGCCACCCA
AAGGCTGCGTCGTCCCTGACTCCGAGGACGAGGAAAGTGGTGGCGTCCACGACTCCGAGCTGCCACCCGAAGGCTGCGTC
GTCCCTGACTCCGAGGACGAGGAAAGTGGCGGCGTCGACGACTCCGAGCTGCCACCCGAAGGCTGCGTCGTCCCTAACTC
CGAGGACGAGGAAAGTGGTGGCGGCGTCCACAACTTGGAGCAGAAACCGGACAAAGACATCTCCGCCAACTTGGAGGAGC
AGCACATGGATGACATTGAGCAGCTTGTCGGTGGGGAGGAGGTGACTGGCCTACAAGATGATGCTGGTGTAGCTGCCAGA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis