Browse Element(s) Details


Os.17761.1.S1_a_at

Description gb:AK067296.1
DB_XREF= gi:32977314
TID=Os.17761.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.17761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102O07, full insert sequence.
FL= gb:AK067296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3211011/11ACT domain containing protein, putative, expressed
LOC_Os03g391502/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32120OsAffx.14081.1.S1_at11/114+19085914..19086426hypothetical protein
LOC_Os04g32130OsAffx.23387.1.S1_at3/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32130OsAffx.1319.1.S1_at2/114+19088823..19091840transposon protein, putative, Mariner sub-class
LOC_Os04g32140OsAffx.3973.1.S1_x_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32140OsAffx.3973.1.S1_at11/114+19092925..19094040microneme protein Sm70, putative
LOC_Os04g32150Os.50800.1.S1_at10/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32150OsAffx.24935.1.S1_at2/114+19095944..19099425amidohydrolase family, putative, expressed
LOC_Os04g32160OsAffx.14084.1.S1_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.1.S1_x_at11/114+19102332..19105288hypothetical protein
LOC_Os04g32160OsAffx.14084.2.S1_x_at4/114+19102332..19105288hypothetical protein
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005829cellular_componentcytosol
GO:0016301molecular_functionkinase activity
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17761.1.S1_a_at--274--1831Chr04:19083419..19083443 (25 bp)
ACGCTGCGTGTCAAGCACAACCCCT
LOC_Os04g32110
Os.17761.1.S1_a_at--457--6692Chr04:19083547..19083571 (25 bp)
GTTCCAGAACTTCAGCCTCATCAAG
LOC_Os04g32110
Os.17761.1.S1_a_at--386--10672Chr04:19083548..19083572 (25 bp)
TTCCAGAACTTCAGCCTCATCAAGC
LOC_Os04g32110
Os.17761.1.S1_a_at--873--3752Chr04:19083563..19083587 (25 bp)
CTCATCAAGCTCTACTCCTAATTAA
LOC_Os04g32110
Os.17761.1.S1_a_at--140--3571Chr04:19083565..19083589 (25 bp)
CATCAAGCTCTACTCCTAATTAATT
LOC_Os04g32110
Os.17761.1.S1_a_at--575--3231Chr04:19083568..19083592 (25 bp)
CAAGCTCTACTCCTAATTAATTTAC
LOC_Os04g32110
Os.17761.1.S1_a_at--204--4811Chr04:19083571..19083595 (25 bp)
GCTCTACTCCTAATTAATTTACTCC
LOC_Os04g32110
Os.17761.1.S1_a_at--508--9531Chr04:19083573..19083597 (25 bp)
TCTACTCCTAATTAATTTACTCCAA
LOC_Os04g32110
Os.17761.1.S1_a_at--743--6531Chr04:19083662..19083686 (25 bp)
GATTTTACTGTAAATATGATTTCAG
LOC_Os04g32110
Os.17761.1.S1_a_at--947--711Chr04:19083677..19083701 (25 bp)
ATGATTTCAGATTTATGACGACGAC
LOC_Os04g32110
Os.17761.1.S1_a_at--750--10311Chr04:19083681..19083705 (25 bp)
TTTCAGATTTATGACGACGACGAAG
LOC_Os04g32110
Target Sequence 
ACGCTGCGTGTCAAGCACAACCCCTTCGCCGACGGCGATGGCGCCGGCGGCGGCGGCGGCGGCGCCACCGATGACGTCGC
TGGCTCGACGGCGTTCCTCTTCGGGAATCTCTTCAAATTCTACCGNCCGTTCCAGAACTTCAGCCTCATCAAGCTCTACT
CCTAATTAATTTACTCCAACCTGGGTTAATTAATTAGCTGTAAATAATTACTTAGTTAGTTAGTTTTATGTTTTTTTCTT
CTAGATTTTACTGTAAATATGATTTCAGATTTATGACGACGACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17761.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis