Browse Element(s) Details


OsAffx.14084.4.S1_at

Description tigr:9632.m03073
TID=OsAffx.14084.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY070079 putative glutamine-rich protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3225011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14084.4.S1_at--85--1631Chr04:19139417..19139441 (25 bp)
AGCGGCAACTCATGCTGGAGCAGCA
LOC_Os04g32250
OsAffx.14084.4.S1_at--1089--691Chr04:19139470..19139494 (25 bp)
ATGATGGCGATGGAGCAGAGGCAGC
LOC_Os04g32250
OsAffx.14084.4.S1_at--951--2131Chr04:19139502..19139526 (25 bp)
ACAGATGATGTCAGCGCTGCAGCAT
LOC_Os04g32250
OsAffx.14084.4.S1_at--11--1551Chr04:19139522..19139546 (25 bp)
AGCATCAGCGACAGCCGGCGATCGT
LOC_Os04g32250
OsAffx.14084.4.S1_at--17--5651Chr04:19139531..19139555 (25 bp)
GACAGCCGGCGATCGTCATGCCGCA
LOC_Os04g32250
OsAffx.14084.4.S1_at--1096--4251Chr04:19139536..19139560 (25 bp)
CCGGCGATCGTCATGCCGCAGCAGG
LOC_Os04g32250
OsAffx.14084.4.S1_at--228--4011Chr04:19139567..19139591 (25 bp)
CGTCCGCCGCCGCATTGGATGCGTT
LOC_Os04g32250
OsAffx.14084.4.S1_at--386--3611Chr04:19139579..19139603 (25 bp)
CATTGGATGCGTTCCTGGATGCGTA
LOC_Os04g32250
OsAffx.14084.4.S1_at--813--1511Chr04:19139627..19139651 (25 bp)
AGCAGCATCGGCATGGCGTGCAGGC
LOC_Os04g32250
OsAffx.14084.4.S1_at--539--8271Chr04:19139636..19139660 (25 bp)
GGCATGGCGTGCAGGCGCCGCAGCA
LOC_Os04g32250
OsAffx.14084.4.S1_at--579--8371Chr04:19139688..19139712 (25 bp)
GGCGTACTGGGCTCCGGCGCATGCC
LOC_Os04g32250
Target Sequence 
AGCGGCAACTCATGCTGGAGCAGCAACAGCAGCAGCAGGCGGCGCTGCAGCAGATGATGGCGATGGAGCAGAGGCAGCAG
CAGCAACAGATGATGTCAGCGCTGCAGCATCAGCGACAGCCGGCGATCGTCATGCCGCAGCAGGGGCATTCGTCCGCCGC
CGCATTGGATGCGTTCCTGGATGCGTACGCTGAGGTGGGGCCGCCGCGACAGCAGCATCGGCATGGCGTGCAGGCGCCGC
AGCAGCCGGAGTCGTCGTCGACGTCGGGGCCGGCGTACTGGGCTCCGGCGCATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14084.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis