Browse Element(s) Details


Os.15712.1.S1_a_at

Description gb:AK059881.1
DB_XREF= gi:32969899
TID=Os.15712.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H11, full insert sequence.
FL= gb:AK099168.1 gb:AK059881.1 gb:AK104201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3227011/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15712.1.S1_a_at--741--2451Chr04:19149386..19149410 (25 bp)
AACAATTGTCCCGAAGACTGCTAAT
LOC_Os04g32270
Os.15712.1.S1_a_at--303--7251Chr04:19149379..19149403 (25 bp)
GTCCCGAAGACTGCTAATGATGTCA
LOC_Os04g32270
Os.15712.1.S1_a_at--1057--4831Chr04:19149367..19149391 (25 bp)
GCTAATGATGTCAAACTGATAAGTG
LOC_Os04g32270
Os.15712.1.S1_a_at--954--1411Chr04:19149329..19149353 (25 bp)
AGAAAACGACAAGAACATTGCGCAG
LOC_Os04g32270
Os.15712.1.S1_a_at--215--5491Chr04:19149317..19149341 (25 bp)
GAACATTGCGCAGTGCAGAGCACCT
LOC_Os04g32270
Os.15712.1.S1_a_at--376--71Chr04:19149313..19149337 (25 bp)
ATTGCGCAGTGCAGAGCACCTTTTG
LOC_Os04g32270
Os.15712.1.S1_a_at--1136--3451Chr04:19149307..19149331 (25 bp)
CAGTGCAGAGCACCTTTTGGTGATC
LOC_Os04g32270
Os.15712.1.S1_a_at--115--10651Chr04:19149282..19149306 (25 bp)
TTCCGAGCACTGCTATCACAATGCA
LOC_Os04g32270
Os.15712.1.S1_a_at--333--5951Chr04:19149278..19149302 (25 bp)
GAGCACTGCTATCACAATGCACGTT
LOC_Os04g32270
Os.15712.1.S1_a_at--250--1971Chr04:19149274..19149298 (25 bp)
ACTGCTATCACAATGCACGTTGTTG
LOC_Os04g32270
Os.15712.1.S1_a_at--728--651Chr04:19149262..19149286 (25 bp)
ATGCACGTTGTTGTGCAGCCATCAT
LOC_Os04g32270
Target Sequence 
AACAATTGTCCCGAAGACTGCTAATGATGTCAAACTGATAAGTGGAGGAAAAATTCTAGAAAACGACAAGAACATTGCGC
AGTGCAGAGCACCTTTTGGTGATCTTCCGAGCACTGCTATCACAATGCACGTTGTTGTGCAGCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15712.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis