Browse Element(s) Details


OsAffx.14084.5.S1_x_at

Description tigr:9632.m03074
TID=OsAffx.14084.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutamine-rich protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14084.5.S1_x_at--858--4651Chr04:19142005..19142029 (25 bp)
GCGTGCAACCGGGATTTCGCGACTC
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--51--5151Chr04:19142009..19142033 (25 bp)
GCAACCGGGATTTCGCGACTCCCTT
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--895--2711Chr04:19144438..19144462 (25 bp)
AAGCAGGTGGTGACCTTCAACGTCG
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--466--711Chr04:19144645..19144669 (25 bp)
ATGATGGCAGCGTTGCAGCAGCGCC
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--190--8511Chr04:19144649..19144673 (25 bp)
TGGCAGCGTTGCAGCAGCGCCAGCA
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--104--4971Chr04:19144701..19144725 (25 bp)
GCATCCCGACGCGATGGATTTGTTC
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--558--9311Chr04:19144704..19144728 (25 bp)
TCCCGACGCGATGGATTTGTTCCTG
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--509--4091Chr04:19144707..19144731 (25 bp)
CGACGCGATGGATTTGTTCCTGGAT
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--1002--4051Chr04:19144712..19144736 (25 bp)
CGATGGATTTGTTCCTGGATGCGTA
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--505--1531Chr04:19144748..19144772 (25 bp)
AGCAGTCGGCGTACAGCTGGATGAC
LOC_Os04g32260
OsAffx.14084.5.S1_x_at--551--9451Chr04:19144753..19144777 (25 bp)
TCGGCGTACAGCTGGATGACGGCGG
LOC_Os04g32260
Target Sequence 
GCGTGCAACCGGGATTTCGCGACTCCCTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTTCCGTACCACGTGTTCGC
GGAGTACGAGGAGGACGAGATCTACGTGGAGGACCAGCCGCCGGCGAAGGACAAGTCGAGCGTGCAGGAGTGGGATGACG
ACCACGAAGCCGAGGCGATCCGCATGGCCGAGGAGTTCGAGAAGCAGGTGGTGACCTTCAACGTCGCCGTCCTGAAGTCC
GCCGCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCTACGAGCGGCGGCAGTCGGAGCA
CGTCCGCGCCCTCGTCCGGCAGCAGCAGCTGGTGGCCCTGCAGAAGCAGCAGCAGATGATGGCGGAGCAGCGGCAGCAGC
AGCAACAGATGATGGCAGCGTTGCAGCAGCGCCAGCAGCCGGCGACGATCATGCCGGCGCAGGGGCATCCCGACGCGATG
GATTTGTTCCTGGATGCGTACGCCGCCGGCGAGCAGTCGGCGTACAGCTGGATGACGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14084.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis