Browse Element(s) Details


OsAffx.26281.1.S1_at

Description tigr:9632.m03076
TID=OsAffx.26281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3228010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26281.1.S1_at--601--2591Chr04:19158768..19158792 (25 bp)
AACGACGGTGGCGTATCAACAATGC
LOC_Os04g32280
OsAffx.26281.1.S1_at--1--1931Chr04:19158772..19158796 (25 bp)
ACGGTGGCGTATCAACAATGCGAGC
LOC_Os04g32280
OsAffx.26281.1.S1_at--596--3011Chr04:19158788..19158812 (25 bp)
AATGCGAGCTACAAGAGACAGGGAC
LOC_Os04g32280
OsAffx.26281.1.S1_at--200--5651Chr04:19158804..19158828 (25 bp)
GACAGGGACGACAGGCAATCCGATT
LOC_Os04g32280
OsAffx.26281.1.S1_at--711--931Chr04:19158816..19158840 (25 bp)
AGGCAATCCGATTGTACCTCACCAT
LOC_Os04g32280
OsAffx.26281.1.S1_at--395--3371NONE
CACCATCATTCAGGCGTAGGAAGAA
NONE
OsAffx.26281.1.S1_at--949--10411Chr04:19159184..19159208 (25 bp)
TTATGGGAAGAACCAGGGAGCACTT
LOC_Os04g32280
OsAffx.26281.1.S1_at--813--1711Chr04:19159195..19159219 (25 bp)
ACCAGGGAGCACTTGAAGAGAGGCT
LOC_Os04g32280
OsAffx.26281.1.S1_at--841--2791Chr04:19159222..19159246 (25 bp)
AAGATGGACAATGTCATCATGGGCA
LOC_Os04g32280
OsAffx.26281.1.S1_at--550--131Chr04:19159246..19159270 (25 bp)
ATTCAAGTCAAGATGGCGGCCTAAT
LOC_Os04g32280
OsAffx.26281.1.S1_at--472--8332Chr04:19159260..19159284 (25 bp)
GGCGGCCTAATTCATATCAAGTTCA
LOC_Os04g32280
Target Sequence 
AACGACGGTGGCGTATCAACAATGCGAGCTACAAGAGACAGGGACGACAGGCAATCCGATTGTACCTCACCATCATTCAG
GCGTAGGAAGAATTATGGGAAGAACCAGGGAGCACTTGAAGAGAGGCTAGAAGATGGACAATGTCATCATGGGCATTCAA
GTCAAGATGGCGGCCTAATTCATATCAAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis