Browse Element(s) Details


Os.51662.1.S1_at

Description gb:AK063305.1
DB_XREF= gi:32973323
TID=Os.51662.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F09, full insert sequence.
FL= gb:AK063305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3231011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51662.1.S1_at--467--3411Chr04:19183332..19183356 (25 bp)
CAGCAATGCCCAGGTGAGCCTGGAT
LOC_Os04g32310
Os.51662.1.S1_at--752--7371Chr04:19183345..19183369 (25 bp)
GTGAGCCTGGATTCGCCTACCGAAA
LOC_Os04g32310
Os.51662.1.S1_at--120--9311Chr04:19183357..19183381 (25 bp)
TCGCCTACCGAAACCGGTTAAGCTG
LOC_Os04g32310
Os.51662.1.S1_at--793--4431Chr04:19183391..19183415 (25 bp)
GCCATTGGTGAAGGTCTCTGGGCAA
LOC_Os04g32310
Os.51662.1.S1_at--1057--3191Chr04:19183413..19183437 (25 bp)
CAATGGGCATGCGTTGCTGCTTGAG
LOC_Os04g32310
Os.51662.1.S1_at--1094--10711Chr04:19183426..19183450 (25 bp)
TTGCTGCTTGAGCTCATCTTGTGAT
LOC_Os04g32310
Os.51662.1.S1_at--412--5911Chr04:19183435..19183459 (25 bp)
GAGCTCATCTTGTGATCTTACTAGA
LOC_Os04g32310
Os.51662.1.S1_at--880--6371Chr04:19183448..19183472 (25 bp)
GATCTTACTAGACTGGGTGTTTTTT
LOC_Os04g32310
Os.51662.1.S1_at--596--10811Chr04:19183631..19183655 (25 bp)
TTGTACTGTGGATGTCATGGTGCCT
LOC_Os04g32310
Os.51662.1.S1_at--1058--7111Chr04:19183644..19183668 (25 bp)
GTCATGGTGCCTGTAAATTCTCGGA
LOC_Os04g32310
Os.51662.1.S1_at--817--111Chr04:19183660..19183684 (25 bp)
ATTCTCGGAAAATTTTGCATCAACG
LOC_Os04g32310
Target Sequence 
CAGCAATGCCCAGGTGAGCCTGGATTCGCCTACCGAAACCGGTTAAGCTGGCTACCCCCGCCATTGGTGAAGGTCTCTGG
GCAATGGGCATGCGTTGCTGCTTGAGCTCATCTTGTGATCTTACTAGACTGGGTGTTTTTTTGCTTTCAGTTGGCAGGGG
TCAGCTGAAAACGAATTGGGTGGTGATTTTTCCTTTCTTTTTTTTTTTTACTGTTTGGTGTTAGAATGTACATTTGTAGT
GGTGAAACAACAAGAACTGAAAAGGCGAGAGAGTGGGAGGGGAGAAGAATTTGGGTGCTTTGTACTGTGGATGTCATGGT
GCCTGTAAATTCTCGGAAAATTTTGCATCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis