Browse Element(s) Details


Os.8748.1.S1_at

Description gb:AK068154.1
DB_XREF= gi:32978172
TID=Os.8748.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130A17, full insert sequence.
FL= gb:AK068154.1 gb:AK121002.1 gb:AK104832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3233011/11Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed
LOC_Os04g32350Os.22245.1.S1_at7/114+19211451..19214042RNA polymerase III RPC4 family protein, expressed
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8748.1.S1_at--229--7611Chr04:19194633..19194657 (25 bp)
GGGCACTCTCAATTGATGAGATGGC
LOC_Os04g32330
Os.8748.1.S1_at--483--8271Chr04:19194655..19194679 (25 bp)
GGCAGGAGGAACATTCACCATCTCT
LOC_Os04g32330
Os.8748.1.S1_at--867--3291Chr04:19194673..19194697 (25 bp)
CATCTCTAACGGTGGTGTTTACGGA
LOC_Os04g32330
Os.8748.1.S1_at--331--4211Chr04:19194726..19194838 (25 bp)
CCCCACAGTCTGCTATTCTTGGAAT
LOC_Os04g32330
Os.8748.1.S1_at--1158--3331Chr04:19194988..19195012 (25 bp)
CACGGAGATTGCTCCTCGACATATA
LOC_Os04g32330
Os.8748.1.S1_at--198--6591Chr04:19194994..19195018 (25 bp)
GATTGCTCCTCGACATATAAACTCC
LOC_Os04g32330
Os.8748.1.S1_at--5--3391Chr04:19195036..19195060 (25 bp)
CAGCCTGAGAGCTGCTTTGTGCTTT
LOC_Os04g32330
Os.8748.1.S1_at--373--6471Chr04:19195092..19195116 (25 bp)
GATACAAAGAGTTGCTTTTCTGAGA
LOC_Os04g32330
Os.8748.1.S1_at--882--5591Chr04:19195122..19195146 (25 bp)
GAAATTTGAGTTGAGGATACCGTGA
LOC_Os04g32330
Os.8748.1.S1_at--728--7691Chr04:19195149..19195173 (25 bp)
GGGTCTCTCTGACAATTATAGACGA
LOC_Os04g32330
Os.8748.1.S1_at--646--8951Chr04:19195158..19195182 (25 bp)
TGACAATTATAGACGAGAGCACCAA
LOC_Os04g32330
Target Sequence 
GGGCACTCTCAATTGATGAGATGGCAGGAGGAACATTCACCATCTCTAACGGTGGTGTTTACGGAAGCCTTNATCAGCAC
ACCTATCATCAACCCCCCACAGTCTGCTATTCTTGGAATGCACTCCATTGTACAACGCCCTGTGGTCGTGGACGGCAACA
TTCTCGCGAGGCCAATGATGTACCTTGCGCTGACATATGACCACAGGCTGATCGACGGCAGAGAAGCTGTCTACTTCCTG
CGCCGCATCAAGGACGTGGTTGAAGACCCACGGAGATTGCTCCTCGACATATAAACTCCGCGCGCGCCACCAATCGCAGC
CTGAGAGCTGCTTTGTGCTTTGTCTGGAAAATAATACTGCAAATTTTTGACTGATACAAAGAGTTGCTTTTCTGAGAAAG
ACGAAATTTGAGTTGAGGATACCGTGAGGGGGTCTCTCTGACAATTATAGACGAGAGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis