Browse Element(s) Details


Os.22245.1.S1_at

Description gb:BX927949
DB_XREF= gi:41882496
DB_XREF=BX927949
CLONE=p837f10p3
TID=Os.22245.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22245 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196500.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g323507/11RNA polymerase III RPC4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed
LOC_Os04g32350Os.22245.1.S1_at7/114+19211451..19214042RNA polymerase III RPC4 family protein, expressed
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22245.1.S1_at--81--6411Chr04:19211691..19211714 (24 bp)
GATCGGAGATTCACTCTTTGATGTC
LOC_Os04g32350
Os.22245.1.S1_at--439--7151Chr04:19211582..19211606 (25 bp)
GTCTCTCCGGGTTCAAATTGCATGT
LOC_Os04g32350
Os.22245.1.S1_at--1157--6831Chr04:19211559..19211583 (25 bp)
GTTTGTCCAGGAGGTTGCGGCAATT
LOC_Os04g32350
Os.22245.1.S1_at--1014--1491Chr04:19211521..19211545 (25 bp)
AGCACTGCTGCACCTTGGGAGAGAT
LOC_Os04g32350
Os.22245.1.S1_at--660--1351Chr04:19211502..19211526 (25 bp)
AGAGATCAGCAAGCGCGCGATTGTA
LOC_Os04g32350
Os.22245.1.S1_at--229--51Chr04:19211483..19211507 (25 bp)
ATTGTAACCCCGGACATCGAGCATC
LOC_Os04g32350
Os.22245.1.S1_at--916--1531Chr04:19211464..19211488 (25 bp)
AGCATCTGCTGGATTCTTTCGACAA
LOC_Os04g32350
Os.22245.1.S1_at--70--7071Chr04:19211430..19211454 (25 bp)
GTAAGCCCATGCCTTATGTGCAAAA
NONE
Os.22245.1.S1_at--715--3131Chr04:19211377..19211401 (25 bp)
AATTTTGTTTGCTCCTCATCCATGA
NONE
Os.22245.1.S1_at--829--571Chr04:19211360..19211384 (25 bp)
ATCCATGAGTTTCCTTTACTTGCCC
NONE
Os.22245.1.S1_at--316--6491Chr04:19211160..19211184 (25 bp)
GATACCTACATTGTTTGTCCTTGCA
NONE
Target Sequence 
GATCGGAGATTCACTCTTTGATGTCTCTCCGGGTTCAAATTGCATGTTTGTCCAGGAGGTTGCGGCAATTAACGCCAGAG
AAAAGCACTGCTGCACCTTGGGAGAGATCAGCAAGCGCGCGATTGTAACCCCGGACATCGAGCATCTGCTGGATTCTTTC
GACAAGATGGAAGCGTAAGCCCATGCCTTATGTGCAAAAGTCATGGCCATATGAACCATTTCATGGGAATTTTGTTTGCT
CCTCATCCATGAGTTTCCTTTACTTGCCCTTGGGCTTCTTTAGACCAAAAAAACGCCAGTTTTATCAAAATGGCAATTTT
GAGTTTTCGTGGGAATATATCAAACGGTGGAGAATCAGTTAGCCAGCAAGTCACAAAATGTCAAAGTGAACTGCTGAGCG
ATTTTGTGTCCNCTTCTCATCTATAGCAGTCAAATTTTGTCATCGATACCTACATTGTTTGTCCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis