Browse Element(s) Details


Os.21317.1.S1_at

Description gb:AK072978.1
DB_XREF= gi:32983001
TID=Os.21317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149O11, full insert sequence.
FL= gb:AK072978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3237011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed
LOC_Os04g32350Os.22245.1.S1_at7/114+19211451..19214042RNA polymerase III RPC4 family protein, expressed
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21317.1.S1_at--1087--5491Chr04:19230201..19230225 (25 bp)
GAACACCCATTCTTACCGTGAATAA
LOC_Os04g32370
Os.21317.1.S1_at--169--9791Chr04:19230223..19230247 (25 bp)
TAAGTTGTTGGAAGCTAGGCATAGC
LOC_Os04g32370
Os.21317.1.S1_at--1048--3571Chr04:19230276..19230300 (25 bp)
CATTAACACCTATATCTTTGGCTGA
LOC_Os04g32370
Os.21317.1.S1_at--562--251Chr04:19230287..19230311 (25 bp)
ATATCTTTGGCTGATGTTTCCCGCA
LOC_Os04g32370
Os.21317.1.S1_at--814--6271Chr04:19230299..19230323 (25 bp)
GATGTTTCCCGCAGATCAACAGCAG
LOC_Os04g32370
Os.21317.1.S1_at--762--6451Chr04:19230312..19230336 (25 bp)
GATCAACAGCAGAAACAGCTCTTGA
LOC_Os04g32370
Os.21317.1.S1_at--1018--8491Chr04:19230913..19230935 (23 bp)
TGGAAACCTTGTGAAAACTTGCATG
LOC_Os04g32370
Os.21317.1.S1_at--884--211Chr04:19230975..19230999 (25 bp)
ATTTGTGCATTCTAGATTGCCCTCT
LOC_Os04g32370
Os.21317.1.S1_at--548--6591Chr04:19230989..19231013 (25 bp)
GATTGCCCTCTGTAAATTTATGTTT
LOC_Os04g32370
Os.21317.1.S1_at--284--2951Chr04:19231038..19231062 (25 bp)
AAGGCGCACTGGTTGGAAGATTTTT
LOC_Os04g32370
Os.21317.1.S1_at--142--6271Chr04:19231168..19231192 (25 bp)
GATGTGAACTATATTGGCGCTGTAA
LOC_Os04g32370
Target Sequence 
GAACACCCATTCTTACCGTGAATAAGTTGTTGGAAGCTAGGCATAGCAGAGAGAGTAGNGAAGTTTCCTCTCCCCCATTA
ACACCTATATCTTTGGCTGATGTTTCCCGCAGATCAACAGCAGAAACAGCTCTTGAAAAAACAAGGATGATGGAAACCTT
GTGAAAACTTGCATGGCCNAACTTCAGTCATCATAGNCAATTTTGTATGTAATTATTTGTGCATTCTAGATTGCCCTCTG
TAAATTTATGTTTCTTGCGAAGGAAAAAGTTGAAATAAAGGCGCACTGGTTGGAAGATTTTTGTTTCTTTNGCCGGCTTT
TCTGACNACCTTATGGATTTAGTGAATCTGACTACNTATTAGTTTACCANTCACNTCANCTCAATATTCTGATTTTTTTG
GGGGGATTGCTGATGTGAACTATATTGGCGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis