Browse Element(s) Details


OsAffx.10196.1.S1_x_at

Description gb:NM_186740.1
DB_XREF= gi:34900565
TID=OsAffx.10196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0565A07.15 (P0565A07.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g324301/11expressed protein
LOC_Os12g118301/11expressed protein
LOC_Os10g291591/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10196.1.S1_x_at--1021--8553Chr07:7671953..7671977 (25 bp)
TGGAGGCGGCGCGACGGCGGTGCTC
NONE
OsAffx.10196.1.S1_x_at--139--9111Chr07:7671973..7671997 (25 bp)
TGCTCGCGCGGCTACGTGCAACGAC
NONE
OsAffx.10196.1.S1_x_at--808--9331Chr07:7671976..7672000 (25 bp)
TCGCGCGGCTACGTGCAACGACGGT
NONE
OsAffx.10196.1.S1_x_at--901--3931Chr07:7671981..7672005 (25 bp)
CGGCTACGTGCAACGACGGTGGCCA
NONE
OsAffx.10196.1.S1_x_at--506--4851Chr07:7671983..7672007 (25 bp)
GCTACGTGCAACGACGGTGGCCACA
NONE
OsAffx.10196.1.S1_x_at--760--9931Chr07:7671985..7672009 (25 bp)
TACGTGCAACGACGGTGGCCACAAC
NONE
OsAffx.10196.1.S1_x_at--1135--7291Chr07:7671988..7672012 (25 bp)
GTGCAACGACGGTGGCCACAACGCC
NONE
OsAffx.10196.1.S1_x_at--18--1931Chr07:7671996..7672020 (25 bp)
ACGGTGGCCACAACGCCCGGAGGCA
NONE
OsAffx.10196.1.S1_x_at--319--2551Chr07:7672007..7672031 (25 bp)
AACGCCCGGAGGCAGTGGCGACGGT
NONE
OsAffx.10196.1.S1_x_at--850--3452Chr07:7672019..7672043 (25 bp)
CAGTGGCGACGGTGGCAGCGGCCGC
NONE
OsAffx.10196.1.S1_x_at--183--9312Chr07:7672064..7672088 (25 bp)
TCCCCATTCTTCTTTGTTCTTCGTT
NONE
Target Sequence 
TGGAGGCGGCGCGACGGCGGTGCTCGCGCGGCTACGTGCAACGACGGTGGCCACAACGCCCGGAGGCAGTGGCGACGGTG
GCAGCGGCCGCCGCTGCGCCCAATCCCTCCCTCCCCATTCTTCTTTGTTCTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10196.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis