Browse Element(s) Details


Os.10149.1.S1_x_at

Description gb:AK100862.1
DB_XREF= gi:32986071
TID=Os.10149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123O09, full insert sequence.
FL= gb:AK100862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3246011/11TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g058001/11TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32470OsAffx.14095.1.S1_s_at11/114+19292462..19297032expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10149.1.S1_x_at--1046--6851Chr04:19267943..19267967 (25 bp)
GTTTGTCAATATCTGGTCTTCTCAC
LOC_Os04g32460
Os.10149.1.S1_x_at--172--6492Chr10:19306610..19306692 (25 bp)
GATAGCCCGTTTGGTGATGCTGCAC
NONE
Os.10149.1.S1_x_at--477--6992Chr05:2871389..2871409 (21 bp)
GTACGAGACAATGCGATCCCTTTGG
LOC_Os05g05800
Os.10149.1.S1_x_at--1013--7991Chr04:19267715..19267739 (25 bp)
GGATGTCATCTTGCAATGTCACGTT
LOC_Os04g32460
Os.10149.1.S1_x_at--336--7711Chr04:19267686..19267710 (25 bp)
GGGTGCCAAGTCCTTGCGTCAAAGA
LOC_Os04g32460
Os.10149.1.S1_x_at--266--9151Chr04:19267672..19267696 (25 bp)
TGCGTCAAAGATGCCGATGCTCAAT
LOC_Os04g32460
Os.10149.1.S1_x_at--362--271Chr04:19267570..19267594 (25 bp)
ATATGTGTACCGCACAACTGCTGGG
LOC_Os04g32460
Os.10149.1.S1_x_at--298--9711Chr04:19267442..19267466 (25 bp)
TCAAAGTGCCTTTCTATAGTTAATG
LOC_Os04g32460
Os.10149.1.S1_x_at--372--9771Chr04:19267422..19267446 (25 bp)
TAATGAGTTTGCCTGTTACTCTGTT
LOC_Os04g32460
Os.10149.1.S1_x_at--788--6771Chr04:19267408..19267432 (25 bp)
GTTACTCTGTTAGCCTATTAATACT
LOC_Os04g32460
Os.10149.1.S1_x_at--888--3071Chr04:19267390..19267413 (24 bp)
AATACTAGTGCTGTTTGAACTTGCT
LOC_Os04g32460
Target Sequence 
GTTTGTCAATATCTGGTCTTCTCACAGACAAAGTTTTCATGTATATTGGGAAATATGCAAAACAACTTGAGATGCTTTCT
ATAGCATTTGCTGGTGACAGTGATAAGGGTATGATGCATGTTATGAATGGATGCAAGAATTTAAGGAAACTGGAGATAAG
AGATAGCCCGTTTGGTGATGCTGCACTCTTGGGGAATTTTGCTAGGTACGAGACAATGCGATCCCTTTGGATGTCATCTT
GCAATGTCACGTTAAAGGGGTGCCAAGTCCTTGCGTCAAAGATGCCGATGCTCAATGTTGAGGTCATAAATGAGCGGGAT
GGTAGCAATGAAATGGAGGAAAACCATGGAGATCTGCCTAAAGTGGAGAAATTATATGTGTACCGCACAACTGCTGGGGC
GAGGGATGATGCACCAAATTTTGTTAAAATCCTATAGAGCTAGCTGAGAGTAGCAAGGAATCCTCTTATTCCATAAGGTA
ACCCCTTTCAATACATTATTTTCAAAGTGCCTTTCTATAGTTAATGAGTTTGCCTGTTACTCTGTTAGCCTATTAATACT
AGTGCTGTTTGAACTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10149.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis