Browse Element(s) Details


OsAffx.3978.1.S1_at

Description tigr:9632.m03089
TID=OsAffx.3978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3240411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3978.1.S1_at--922--1711Chr04:19243771..19243795 (25 bp)
ACCAGCAAGTTCGACAACGATAACT
LOC_Os04g32404
OsAffx.3978.1.S1_at--1121--9351Chr04:19243761..19243785 (25 bp)
TCGACAACGATAACTGCACGGGCCT
LOC_Os04g32404
OsAffx.3978.1.S1_at--223--2571Chr04:19243756..19243780 (25 bp)
AACGATAACTGCACGGGCCTCGTAG
LOC_Os04g32404
OsAffx.3978.1.S1_at--1159--2531Chr04:19243750..19243774 (25 bp)
AACTGCACGGGCCTCGTAGAATATG
LOC_Os04g32404
OsAffx.3978.1.S1_at--1082--3331Chr04:19243263..19243769 (25 bp)
CACGGGCCTCGTAGAATATGCATGG
LOC_Os04g32404
OsAffx.3978.1.S1_at--230--5011Chr04:19243244..19243268 (25 bp)
GCATGGCAACACTTTGTGAGGCGTA
LOC_Os04g32404
OsAffx.3978.1.S1_at--477--2471Chr04:19243237..19243261 (25 bp)
AACACTTTGTGAGGCGTACGGTTGA
LOC_Os04g32404
OsAffx.3978.1.S1_at--869--4631Chr04:19243224..19243248 (25 bp)
GCGTACGGTTGAAGACATGCTGGAC
LOC_Os04g32404
OsAffx.3978.1.S1_at--1047--2751Chr04:19243213..19243237 (25 bp)
AAGACATGCTGGACGGTGACCATCT
LOC_Os04g32404
OsAffx.3978.1.S1_at--1085--7371Chr04:19243198..19243222 (25 bp)
GTGACCATCTCGGCCTGGTGAACGA
LOC_Os04g32404
OsAffx.3978.1.S1_at--199--4031Chr04:19243156..19243180 (25 bp)
CGTCACGGTGCGTGCACGTCGCGCT
LOC_Os04g32404
Target Sequence 
ACCAGCAAGTTCGACAACGATAACTGCACGGGCCTCGTAGAATATGCATGGCAACACTTTGTGAGGCGTACGGTTGAAGA
CATGCTGGACGGTGACCATCTCGGCCTGGTGAACGACGAGCAGGTGCAGCAGGCGTCACGGTGCGTGCACGTCGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis