Browse Element(s) Details


OsAffx.14090.1.S1_at

Description tigr:9632.m03080
TID=OsAffx.14090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycerophosphoryl diester phosphodiesterase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3232011/11Glycerophosphoryl diester phosphodiesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed
LOC_Os04g32350Os.22245.1.S1_at7/114+19211451..19214042RNA polymerase III RPC4 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14090.1.S1_at--1083--4371Chr04:19188293..19188317 (25 bp)
CCAAGGAGAGGCCAATCTTCTTCTC
LOC_Os04g32320
OsAffx.14090.1.S1_at--427--4091Chr04:19188330..19188354 (25 bp)
CGACGCCGCGCGAATTATGCGCAAA
LOC_Os04g32320
OsAffx.14090.1.S1_at--540--4591Chr04:19188348..19188372 (25 bp)
GCGCAAACTGCAAGATAGATACCCT
LOC_Os04g32320
OsAffx.14090.1.S1_at--963--6471Chr04:19188361..19188854 (25 bp)
GATAGATACCCTGTGTACTTCCTGA
LOC_Os04g32320
OsAffx.14090.1.S1_at--1041--9951Chr04:19188367..19188860 (25 bp)
TACCCTGTGTACTTCCTGACGAAAG
LOC_Os04g32320
OsAffx.14090.1.S1_at--803--1671Chr04:19188975..19188999 (25 bp)
AGCCGTCGGCGATCGGCCGGATCAA
LOC_Os04g32320
OsAffx.14090.1.S1_at--741--4831Chr04:19189033..19189159 (25 bp)
GCTCAACAACGTGCCGAAGGCGGTG
LOC_Os04g32320
OsAffx.14090.1.S1_at--801--4111Chr04:19189149..19189173 (25 bp)
CGAAGGCGGTGTACTTGCAGCAGCT
LOC_Os04g32320
OsAffx.14090.1.S1_at--214--7291Chr04:19189265..19189289 (25 bp)
GTGCCGGAGCGTGATTCTTCTTCTT
LOC_Os04g32320
OsAffx.14090.1.S1_at--1121--9551Chr04:19189286..19189310 (25 bp)
TCTTCTTACATGGACGGTGGTGGAG
LOC_Os04g32320
OsAffx.14090.1.S1_at--37--10551Chr04:19189361..19189385 (25 bp)
TTCTCTCGGCGGGAGGACGTCTCGT
LOC_Os04g32320
Target Sequence 
CCAAGGAGAGGCCAATCTTCTTCTCCAGCTTCCAGCCCGACGCCGCGCGAATTATGCGCAAACTGCAAGATAGATACCCT
GTGTACTTCCTGACGAAAGGAGGGACGCAGGTGTTCGCCGACGAGAGGCGGAACTCGCTGGAGGCTGCCGTGAAGCTGTG
CGTCGCCGGCAGCCTGCGGGGGATCGTGTCGGAGGCGCGGGCGGTGCTCCGGCAGCCGTCGGCGATCGGCCGGATCAAGG
AGGCCGGCCTCTCCCTCCTCACCTACGGCCAGCTCAACAACGTGCCGAAGGCGGTGTACTTGCAGCAGCTGATGGGGGTG
GACGGCGTGATCGTCGACCTGGTGGCGGAGATCGCCGCGGCCGTGTCCGAGTTCGCCGCCGCCGCCGCCGCGGCGGTGCC
GGTGCCGGAGCGTGATTCTTCTTCTTCTTACATGGACGGTGGTGGAGATGTGGGGTTGCTGGAGATGACGTCGCCGGCGG
CGAGGACGACGGCGAGCTTCTCTCGGCGGGAGGACGTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis