Browse Element(s) Details


OsAffx.12336.1.S1_at

Description tigr:9630.m03198
TID=OsAffx.12336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3366010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein
LOC_Os02g33650OsAffx.12335.1.S1_at11/112+20033376..20033645hypothetical protein
LOC_Os02g33660OsAffx.12336.1.S1_at10/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.27834.1.S1_x_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.51123.1.S1_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33670Os.54066.1.S1_at10/112+20050581..20051491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12336.1.S1_at--844--1851Chr02:20037463..20037487 (25 bp)
ACGAGCTCTACATGTCTACCTCATT
LOC_Os02g33660
OsAffx.12336.1.S1_at--893--7151Chr02:20037450..20037474 (25 bp)
GTCTACCTCATTGCCATCAAACGTT
LOC_Os02g33660
OsAffx.12336.1.S1_at--261--371Chr02:20037435..20037459 (25 bp)
ATCAAACGTTGCCTCGTCCTGGAGG
LOC_Os02g33660
OsAffx.12336.1.S1_at--90--911Chr02:20037413..20037437 (25 bp)
AGGCTGAGGCTCTGCATCTGTTGCG
LOC_Os02g33660
OsAffx.12336.1.S1_at--103--4331Chr02:20037302..20037326 (25 bp)
CCATCCCAGATGAGGAGCTCGCCAG
LOC_Os02g33660
OsAffx.12336.1.S1_at--123--4671NONE
GCTAGGGAGGTACGACTACGCAATC
NONE
OsAffx.12336.1.S1_at--111--6151Chr02:20035924..20035948 (25 bp)
GAGGTCATCGTGATAGTCCTCCTCA
LOC_Os02g33660
OsAffx.12336.1.S1_at--635--7531Chr02:20035825..20035849 (25 bp)
GTGGCTGTTGTCGATGTAGTGCCCC
LOC_Os02g33660
OsAffx.12336.1.S1_at--1031--5351Chr02:20035760..20035784 (25 bp)
GAAGAGTACCAAAACCAGCCGCAGC
LOC_Os02g33660
OsAffx.12336.1.S1_at--914--8071Chr02:20035707..20035730 (24 bp)
GGAGCCCGACCTAAGTCCAAGGTAT
LOC_Os02g33660
OsAffx.12336.1.S1_at--1081--5571Chr02:20035034..20035058 (25 bp)
GAAATGAACGCCTTTGGTGCCAGCT
LOC_Os02g33660
Target Sequence 
ACGAGCTCTACATGTCTACCTCATTGCCATCAAACGTTGCCTCGTCCTGGAGGCTGAGGCTCTGCATCTGTTGCGCGGCG
GCAACGAGATGTGCGGCCAGGCGGCGTTGGGGTCCCATCCCAGATGAGGAGCTCGCCAGCCGGACGGCAGCGCCGCGCGC
GAGGAGGAGGTTGCCGGCCGTCTGCATGCTAGGGAGGTACGACTACGCAATCGAAGAGAATGTCGAGGTCGAGGTCATCG
TGATAGTCCTCCTCACCATCGTGGTTGTTGGGGACGACGACGTCGTGGCTGCAGGATCCCTCCTCTTGGCCGCTGCTGGG
GATGTGGCGGTGGCTGTTGTCGATGTAGTGCCCCTCATCCTGCGCAAACCTGTCCTCCACCATGCTGCTGGTTGGAAGAG
TACCAAAACCAGCCGCAGCAAGGGTCTGGTCGCGCCGGTGCTGACCTTGGAGCCCGACCTAAGTCCAAGGTATAAATATA
GATTGTATGTTGAAATAGAAGAGAATGAGAAACGAGGGCTGAGAAATGAACGCCTTTGGTGCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis