Browse Element(s) Details


OsAffx.12335.1.S1_at

Description tigr:9630.m03197
TID=OsAffx.12335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3365011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein
LOC_Os02g33650OsAffx.12335.1.S1_at11/112+20033376..20033645hypothetical protein
LOC_Os02g33660OsAffx.12336.1.S1_at10/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.27834.1.S1_x_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.51123.1.S1_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33670Os.54066.1.S1_at10/112+20050581..20051491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12335.1.S1_at--62--3271Chr02:20033584..20033608 (25 bp)
CAAAACCTTTTGTCGCTCCCTGGTG
LOC_Os02g33650
OsAffx.12335.1.S1_at--204--10391Chr02:20033577..20033601 (25 bp)
TTTTGTCGCTCCCTGGTGCCGGTAT
LOC_Os02g33650
OsAffx.12335.1.S1_at--440--3891Chr02:20033565..20033589 (25 bp)
CTGGTGCCGGTATCCTCTTCTCTGT
LOC_Os02g33650
OsAffx.12335.1.S1_at--932--3631Chr02:20033529..20033553 (25 bp)
CTTCTCCACAACCACGGTCATGAAG
LOC_Os02g33650
OsAffx.12335.1.S1_at--747--2211Chr02:20033522..20033546 (25 bp)
ACAACCACGGTCATGAAGCAGCTCT
LOC_Os02g33650
OsAffx.12335.1.S1_at--229--2711Chr02:20033507..20033531 (25 bp)
AAGCAGCTCTCTAGTAAGGTTCCCC
LOC_Os02g33650
OsAffx.12335.1.S1_at--439--9531Chr02:20033498..20033522 (25 bp)
TCTAGTAAGGTTCCCCAACATCGTC
LOC_Os02g33650
OsAffx.12335.1.S1_at--547--3411Chr02:20033458..20033482 (25 bp)
CAGCAGCTCTCTTACTACCATCTAA
LOC_Os02g33650
OsAffx.12335.1.S1_at--1145--2011Chr02:20033445..20033469 (25 bp)
ACTACCATCTAACCAGTTGGCCAAG
LOC_Os02g33650
OsAffx.12335.1.S1_at--190--1251Chr02:20033431..20033455 (25 bp)
AGTTGGCCAAGATGCCTCTACTGCT
LOC_Os02g33650
OsAffx.12335.1.S1_at--1084--2791Chr02:20033423..20033447 (25 bp)
AAGATGCCTCTACTGCTTGCACCAT
LOC_Os02g33650
Target Sequence 
CAAAACCTTTTGTCGCTCCCTGGTGCCGGTATCCTCTTCTCTGTAATCAACCACCCTTCTCCACAACCACGGTCATGAAG
CAGCTCTCTAGTAAGGTTCCCCAACATCGTCGATCTCTCCTACCTCCAGCAGCTCTCTTACTACCATCTAACCAGTTGGC
CAAGATGCCTCTACTGCTTGCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis