Browse Element(s) Details


Os.27834.1.S1_x_at

Description gb:CB646222
DB_XREF= gi:29641215
DB_XREF=OSJNEb08I13.r
CLONE=OSJNEb08I13
TID=Os.27834.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27834 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_201420.1 (A.thaliana) ferredoxin-NADP+ reductase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g336601/11hypothetical protein
LOC_Os01g461101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein
LOC_Os02g33650OsAffx.12335.1.S1_at11/112+20033376..20033645hypothetical protein
LOC_Os02g33660OsAffx.12336.1.S1_at10/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.27834.1.S1_x_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.51123.1.S1_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33670Os.54066.1.S1_at10/112+20050581..20051491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27834.1.S1_x_at--1160--29925Chr12:10123823..10123847 (25 bp)
AATGACTAATGGGTCCCACACATTT
NONE
Os.27834.1.S1_x_at--591--1392Chr12:23316063..23316087 (25 bp)
AGACTCGGTCAATATCGCTACGTAG
NONE
Os.27834.1.S1_x_at--1018--556Chr07:5434921..5434941 (21 bp)
ATCCAGTTTTATGGTTTAGGGTCAT
NONE
Os.27834.1.S1_x_at--730--10332Chr06:8666435..8666459 (25 bp)
TTTCAATCACAGTTAAGGGTCACGA
NONE
Os.27834.1.S1_x_at--830--7692Chr06:8666451..8666475 (25 bp)
GGGTCACGATGTGAACTTATTCCTA
NONE
Os.27834.1.S1_x_at--74--10191Chr06:8666468..8666492 (25 bp)
TATTCCTAGATTTGGGTGTAAGCCC
NONE
Os.27834.1.S1_x_at--593--1251Chr06:8666475..8666499 (25 bp)
AGATTTGGGTGTAAGCCCATTAAGC
NONE
Os.27834.1.S1_x_at--196--4551Chr06:8666489..8666513 (25 bp)
GCCCATTAAGCCCAATAGAGCTAAG
NONE
Os.27834.1.S1_x_at--78--1371Chr06:8666505..8666529 (25 bp)
AGAGCTAAGCTGAAAAGCAGCCCAA
NONE
Os.27834.1.S1_x_at--300--5511Chr06:8666516..8666540 (25 bp)
GAAAAGCAGCCCAAGAAAACCAGGT
NONE
Os.27834.1.S1_x_at--598--4331Chr06:8666535..8666559 (25 bp)
CCAGGTTTTGCCTTTGTACAAACAT
NONE
Target Sequence 
AATGACTAATGGGTCCCACACATTTTTTAATTCTAATGCCACCTAAGTGCCACGTCAATGCCACGTGGAACGAAGACTCG
GTCAATATCGCTACGTAGGCGCCACGTCAGCAAAACTGCCCTCCAAAACCGCTGAGGGAGTTAAATTGCACCAGTTTTAG
GAGTTTGGGGGTCGAGATATCCAGTTTTATGGTTTAGGGTCATGGATTAGATTTCAATCACAGTTAAGGGTCACGATGTG
AACTTATTCCTAGATTTGGGTGTAAGCCCATTAAGCCCAATAGAGCTAAGCTGAAAAGCAGCCCAAGAAAACCAGGTTTT
GCCTTTGTACAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27834.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis