Browse Element(s) Details


OsAffx.4917.1.S1_at

Description tigr:9634.m02317
TID=OsAffx.4917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2350410/11DTW domain-containing protein, putative, expressed
LOC_Os02g336201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified
LOC_Os06g23460OsAffx.27788.1.S1_at11/116+13689562..13696927KH domain containing protein, expressed
LOC_Os06g23470NANA6+13698713..13699326hypothetical protein
LOC_Os06g23480NANA6+13700073..13700447hypothetical protein
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23530Os.6639.1.S1_at11/116+13722596..13726110Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os06g23540OsAffx.27789.4.S1_at10/116+13737448..13738457hypothetical protein
LOC_Os06g23549OsAffx.27789.1.S1_at1/116+13740256..13740974NA
LOC_Os06g23560Os.54198.1.S1_at11/116+13742330..13744244UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4917.1.S1_at--895--1351Chr06:13716192..13716216 (25 bp)
AGAGACTTCTGCGATGGTAGCGAGA
LOC_Os06g23504
OsAffx.4917.1.S1_at--66--2951Chr06:13716313..13716337 (25 bp)
AAGGCTTTGCGCGACAGTAGCACCA
LOC_Os06g23504
OsAffx.4917.1.S1_at--262--1191Chr06:13716328..13716352 (25 bp)
AGTAGCACCAATAGCTCTGTCTCCG
LOC_Os06g23504
OsAffx.4917.1.S1_at--747--9292Chr06:13716355..13716379 (25 bp)
TCCGACAACACCGATGATGAGCTGA
LOC_Os06g23504
OsAffx.4917.1.S1_at--463--7911NONE
GGTTGATGTTGTTTGCATCACCAAC
NONE
OsAffx.4917.1.S1_at--780--2431Chr06:13717344..13717365 (22 bp)
AAAAGTCAGAGTCCGCCTCAAGATG
LOC_Os06g23504
OsAffx.4917.1.S1_at--645--3492Chr06:13717370..13717394 (25 bp)
CATGGCATCTCTTCAGTACAGGAGG
LOC_Os06g23504
OsAffx.4917.1.S1_at--916--612Chr06:13717419..13717443 (25 bp)
ATGCGGATGATTGAGCACGTCTCTC
LOC_Os06g23504
OsAffx.4917.1.S1_at--891--5092Chr06:13717433..13717457 (25 bp)
GCACGTCTCTCAGATTCAGTTTGTA
LOC_Os06g23504
OsAffx.4917.1.S1_at--592--7392Chr06:13717459..13717483 (25 bp)
GTGAGGAGCCACATACATCTCTCTC
LOC_Os06g23504
OsAffx.4917.1.S1_at--997--2671Chr06:13717497..13717521 (25 bp)
AAGCGTTGTTCTGTGCCTCAGGACA
LOC_Os06g23504
Target Sequence 
AGAGACTTCTGCGATGGTAGCGAGAGCATCAAGGCTGGTGGCGGCGGAATTGGCGGCGGCAAGGGTAGAAGTGGAAGCAG
CGGCAGCGGCAGATGCAGCGCGTGCGGCGGCGGCAGAGCTCAAGGCTTTGCGCGACAGTAGCACCAATAGCTCTGTCTCC
GCCTCCGACAACACCGATGATGAGCTGACGAGGGAGGCAGCTCGGACGACAGGGAGGATTGAACATGAGGAGTACGGAGC
GGGAGTAATGGTTGATGTTGTTTGCATCACCAACAAAAAAAGTCAGAGTCCGCCTCAAGATGCGGTCATGGCATCTCTTC
AGTACAGGAGGGGGCTTCCATATGCTCCTCACCTGATGCGGATGATTGAGCACGTCTCTCAGATTCAGTTTGTATGTGAG
GAGCCACATACATCTCTCTCCCTGCGCTTACCCAAGCGTTGTTCTGTGCCTCAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis