Browse Element(s) Details


Os.6639.1.S1_at

Description gb:AK100422.1
DB_XREF= gi:32985631
TID=Os.6639.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088B11, full insert sequence.
FL= gb:AK058622.1 gb:AK100422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2353011/11Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23470NANA6+13698713..13699326hypothetical protein
LOC_Os06g23480NANA6+13700073..13700447hypothetical protein
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23530Os.6639.1.S1_at11/116+13722596..13726110Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os06g23540OsAffx.27789.4.S1_at10/116+13737448..13738457hypothetical protein
LOC_Os06g23549OsAffx.27789.1.S1_at1/116+13740256..13740974NA
LOC_Os06g23560Os.54198.1.S1_at11/116+13742330..13744244UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g23570OsAffx.15581.1.S1_at11/116+13749550..13750947hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6639.1.S1_at--645--9871Chr06:13723088..13723112 (25 bp)
TACAGGACCATTGCTGATCATCAGC
LOC_Os06g23530
Os.6639.1.S1_at--871--9571Chr06:13723036..13723060 (25 bp)
TCTTCCAGCAGCAACCAGAGTGGGT
LOC_Os06g23530
Os.6639.1.S1_at--130--7491Chr06:13723017..13723041 (25 bp)
GTGGGTTATCTATCATGAAGTCGTC
LOC_Os06g23530
Os.6639.1.S1_at--368--6151Chr06:13722968..13722992 (25 bp)
GAGGTGACAGCCATTGACCCAAGAT
LOC_Os06g23530
Os.6639.1.S1_at--75--8291Chr06:13722943..13722967 (25 bp)
GGCTTGTTGAACTGGCACCGAGGTT
LOC_Os06g23530
Os.6639.1.S1_at--607--6151Chr06:13722924..13722948 (25 bp)
GAGGTTCTACAGATCTGCAGACCCA
LOC_Os06g23530
Os.6639.1.S1_at--394--1011Chr06:13722869..13722893 (25 bp)
AGGATTGAGCCTCTGTATGACAGAT
LOC_Os06g23530
Os.6639.1.S1_at--372--2671Chr06:13722815..13722839 (25 bp)
AAGCGCCGAGGGTAATTTGTCTGTA
LOC_Os06g23530
Os.6639.1.S1_at--666--6811Chr06:13722786..13722810 (25 bp)
GTTTTTACTTCCACTATAGCTGCTC
LOC_Os06g23530
Os.6639.1.S1_at--283--4771Chr06:13722768..13722792 (25 bp)
GCTGCTCTTTATGCAATGTAAGCTG
LOC_Os06g23530
Os.6639.1.S1_at--412--5852Chr06:13722676..13722700 (25 bp)
GACCATCTTGTTTCTCTTTTCATTT
LOC_Os06g23530
Target Sequence 
TACAGGACCATTGCTGATCATCAGCAGGTGTATATCCACCCTGCCAGCGCTCTCTTCCAGCAGCAACCAGAGTGGGTTAT
CTATCATGAAGTCGTCATGACCACAAAAGAGTACATGAGGGAGGTGACAGCCATTGACCCAAGATGGCTTGTTGAACTGG
CACCGAGGTTCTACAGATCTGCAGACCCAACGAAGATCAGTAAGCGGAAGCGCCAAGAAAGGATTGAGCCTCTGTATGAC
AGATACAACGAGCCAAACTCATGGCGCCTCAGCAAGCGCCGAGGGTAATTTGTCTGTATATAGTTTTTACTTCCACTATA
GCTGCTCTTTATGCAATGTAAGCTGAGTACTTGTATGTAAGTGTAAATATACTCTGCTGATAAGTTCCAATACATATTGG
GATATTAANGCTTGACCATCTTGTTTCTCTTTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis