Browse Element(s) Details


Os.54198.1.S1_at

Description gb:AK102481.1
DB_XREF= gi:32987690
TID=Os.54198.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094L01, full insert sequence.
FL= gb:AK102481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2356011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23530Os.6639.1.S1_at11/116+13722596..13726110Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os06g23540OsAffx.27789.4.S1_at10/116+13737448..13738457hypothetical protein
LOC_Os06g23549OsAffx.27789.1.S1_at1/116+13740256..13740974NA
LOC_Os06g23560Os.54198.1.S1_at11/116+13742330..13744244UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g23570OsAffx.15581.1.S1_at11/116+13749550..13750947hypothetical protein
LOC_Os06g23580OsAffx.4918.1.S1_at11/116+13752472..13753181hypothetical protein
LOC_Os06g23590NANA6+13754125..13754577expressed protein
LOC_Os06g23600NANA6+13763454..13766165hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54198.1.S1_at--208--7671Chr06:13742822..13742846 (25 bp)
GGGATCATCGTGCACTGCATTCGCT
LOC_Os06g23560
Os.54198.1.S1_at--177--4951Chr06:13742806..13742830 (25 bp)
GCATTCGCTGAATTTCTCAAGGACA
LOC_Os06g23560
Os.54198.1.S1_at--1079--5271Chr06:13742771..13742795 (25 bp)
GAATGTTGCCATGGCGCATTCCAAT
LOC_Os06g23560
Os.54198.1.S1_at--183--5231Chr06:13742733..13742757 (25 bp)
GAATTTCTTCCTGAGCATGGCTCTT
LOC_Os06g23560
Os.54198.1.S1_at--738--5831Chr06:13742708..13742732 (25 bp)
GACCTTTGCATTTGTCTTCCATCAA
LOC_Os06g23560
Os.54198.1.S1_at--694--5511Chr06:13742671..13742695 (25 bp)
GAAAATTGTCCAAACCCATCTGCAA
LOC_Os06g23560
Os.54198.1.S1_at--843--6311Chr06:13742574..13742598 (25 bp)
GATGACAGGTCTCTTACTTGTTAGA
LOC_Os06g23560
Os.54198.1.S1_at--1107--9371Chr06:13742531..13742555 (25 bp)
TCGTAGTTCGTAGTGGTCTGGTCAA
LOC_Os06g23560
Os.54198.1.S1_at--180--3511Chr06:13742501..13742525 (25 bp)
CATGGTGCTTCATTGCTGTTGAACA
LOC_Os06g23560
Os.54198.1.S1_at--47--6211Chr06:13742470..13742494 (25 bp)
GAGGCCTCCAAGATAATTTCCCATT
LOC_Os06g23560
Os.54198.1.S1_at--514--9311Chr06:13742452..13742476 (25 bp)
TCCCATTAAGGCCTTGTTCTTCGGT
LOC_Os06g23560
Target Sequence 
GGGATCATCGTGCACTGCATTCGCTGAATTTCTCAAGGACATGGAGGAGGGGAATGTTGCCATGGCGCATTCCAATCAGG
TTGAAACTTGAATTTCTTCCTGAGCATGGCTCTTGACCTTTGCATTTGTCTTCCATCAATTAGGATCCATAGAAAATTGT
CCAAACCCATCTGCAAGCACCACAGTTGGTCAAATGCTTGTTTATGATAAGCTTAAGTTCAAATGAAATTCACTGACCAC
AAATATGTGATGACAGGTCTCTTACTTGTTAGAAATTCAAGCTTTTCAATTTCGTAGTTCGTAGTGGTCTGGTCAATTAT
ACATGGTGCTTCATTGCTGTTGAACAGTTGGGGAGGCCTCCAAGATAATTTCCCATTAAGGCCTTGTTCTTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis