Browse Element(s) Details


OsAffx.27789.4.S1_at

Description tigr:9634.m02320
TID=OsAffx.27789.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2354010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23530Os.6639.1.S1_at11/116+13722596..13726110Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os06g23540OsAffx.27789.4.S1_at10/116+13737448..13738457hypothetical protein
LOC_Os06g23549OsAffx.27789.1.S1_at1/116+13740256..13740974NA
LOC_Os06g23560Os.54198.1.S1_at11/116+13742330..13744244UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g23570OsAffx.15581.1.S1_at11/116+13749550..13750947hypothetical protein
LOC_Os06g23580OsAffx.4918.1.S1_at11/116+13752472..13753181hypothetical protein
LOC_Os06g23590NANA6+13754125..13754577expressed protein
LOC_Os06g23600NANA6+13763454..13766165hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27789.4.S1_at--632--5131Chr06:13737500..13737524 (25 bp)
GCAAAGGGCGTCAGCAGCAAGCAGC
LOC_Os06g23540
OsAffx.27789.4.S1_at--377--3331Chr06:13737354..13737743 (25 bp)
CACTGCAGCAGGTTGTGAAGATGCC
NONE
OsAffx.27789.4.S1_at--350--4512Chr06:13737741..13737765 (25 bp)
GCCGAAAAGAACACTGCTCACATAT
LOC_Os06g23540
OsAffx.27789.4.S1_at--394--7054Chr08:24070637..24070661 (25 bp)
GTAACACAAATACCAGCGATCCTCC
NONE
OsAffx.27789.4.S1_at--505--9013Chr08:24070677..24070700 (24 bp)
TGCAAGTCAGTCAAAGAGGCCTAGG
NONE
OsAffx.27789.4.S1_at--671--6511Chr06:13737862..13737886 (25 bp)
GATATCATTGGTGATCCAGTGGAAT
LOC_Os06g23540
OsAffx.27789.4.S1_at--327--6131Chr06:13737948..13737972 (25 bp)
GAGTGGTCCAACTCAACCAGATTTT
LOC_Os06g23540
OsAffx.27789.4.S1_at--488--9013Chr08:24070875..24070899 (25 bp)
TGCACATTTCCTCGTAAGTGGCAAA
NONE
OsAffx.27789.4.S1_at--188--331Chr06:13738341..13738365 (25 bp)
ATAAGGTTTCTCATTAAGCAAGGTG
LOC_Os06g23540
OsAffx.27789.4.S1_at--820--2891Chr06:13738360..13738384 (25 bp)
AAGGTGATCCTTTCCGTGGACAAGA
LOC_Os06g23540
OsAffx.27789.4.S1_at--660--5611Chr06:13738378..13738402 (25 bp)
GACAAGATAAGACCAATGCATCCCT
LOC_Os06g23540
Target Sequence 
GCAAAGGGCGTCAGCAGCAAGCAGCAGCACTGCAGCAGGTTGTGAAGATGCCGAAAAGAACACTGCTCACATATTATTCT
AGTTTAAGTAACACAAATACCAGCGATCCTCCACTCAATAATGAGATTGCAAGTCAGTCAAAGAGGCCTAGGGCAGAGTT
TAGTCATATGGATATCATTGGTGATCCAGTGGAATGGAAACCAATTGAGAATTATCAACCTGAAATTAGAGATCAAGTAA
AAAGGATATATGCATTGAGTGGTCCAACTCAACCAGATTTTTGCACATTTCCTCGTAAGTGGCAAAGTGGTGAATGGAGG
AAAAAATGCAAAGACTTTATGAACCAAAGGACAAGTATATTTAGGAAAATTGAGATTGTTAGCAAGGAGGAAGACATTAG
ATACAAGATTCGGTTGACATCTTCTTTAGATGTTATAAGGTTTCTCATTAAGCAAGGTGATCCTTTCCGTGGACAAGATA
AGACCAATGCATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27789.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis