Browse Element(s) Details


OsAffx.32296.1.A1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf241
TID=OsAffx.32296.1
CNT=1
FEA=DNA_38
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g050304/11sucrose phosphate phosphatase, putative, expressed
LOC_Os06g235041/11DTW domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04990OsAffx.24103.1.S1_at11/112+2367921..2368406hypothetical protein
LOC_Os02g05000Os.52587.1.S1_at11/112+2369614..2371346expressed protein
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed
LOC_Os02g05070OsAffx.24105.1.S1_x_at11/112+2412243..2413337expressed protein
LOC_Os02g05080OsAffx.24102.1.S1_x_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24102.2.S1_s_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24107.1.A1_at2/112+2415272..2417243hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005986biological_processsucrose biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0050307molecular_functionsucrose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32296.1.A1_at--619--5011NONE
GCAGTCGAATCCGTAGCAACATCAC
NONE
OsAffx.32296.1.A1_at--605--1171Chr03:34436857..34436879 (23 bp)
AGTAACATCAGCTCAAGTCCTTTCA
NONE
OsAffx.32296.1.A1_at--1059--1132Chr03:34436870..34436894 (25 bp)
AGTCCTTTCACAAAATGGCTTCTGG
NONE
OsAffx.32296.1.A1_at--1160--852Chr06:4068704..4068724 (21 bp)
ATGGCTTCTGGAGTACATTCTGTAA
NONE
OsAffx.32296.1.A1_at--438--2431NONE
AAAACCTCTGCCAGTTGCTCTATAT
NONE
OsAffx.32296.1.A1_at--902--4812Chr06:13713008..13713032 (25 bp)
GCTCTATATTTTGCACCACCATGGA
LOC_Os06g23504
OsAffx.32296.1.A1_at--596--10171Chr07:7970444..7970468 (25 bp)
TTTCTAGTCCAATCCCCATAAACAT
NONE
OsAffx.32296.1.A1_at--198--8432Chr06:4068941..4068965 (25 bp)
GGCCATCAAAAGACCTAGCTGCACA
NONE
OsAffx.32296.1.A1_at--1043--1391NONE
AGACTGAGATCCCATAGCCGCTTGA
NONE
OsAffx.32296.1.A1_at--227--311NONE
ATAGCCGCTTGAAGTGCACGATTCC
NONE
OsAffx.32296.1.A1_at--752--9612Chr07:7970544..7970567 (24 bp)
TCATCCGTGCTTGCTTCATAATTGC
NONE
Target Sequence 
GCAGTCGAATCCGTAGCAACATCACCATACAACTGATAGACTACTAGCAGTAACATCAGCTCAAGTCCTTTCACAAAATG
GCTTCTGGAGTACATTCTGTAATTCTCAGCAAACCTTACATGGCGAACAACAAAACCTCTGCCAGTTGCTCTATATTTTG
CACCACCATGGAGAATTGTGCGGCCAAAATAATGTGACTTGGTCCCAAGGTAGAAAGTGAAGAACACTGAACAGAGCTGA
AGCTGCATGATTATGAAATCCCCCAGGGCGCTTCTGAAACCTCTTTCTAGTCCAATCCCCATAAACATTGGCAAGGCCAT
CAAAAGACCTAGCTGCACAATAGACTGAGATCCCATAGCCGCTTGAAGTGCACGATTCCCTCTCATCCGTGCTTGCTTCA
TAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32296.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis