Browse Element(s) Details


OsAffx.24107.1.A1_at

Description tigr:9630.m00437
TID=OsAffx.24107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g050802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed
LOC_Os02g05070OsAffx.24105.1.S1_x_at11/112+2412243..2413337expressed protein
LOC_Os02g05080OsAffx.24102.1.S1_x_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24102.2.S1_s_at11/112+2415272..2417243hypothetical protein
LOC_Os02g05080OsAffx.24107.1.A1_at2/112+2415272..2417243hypothetical protein
LOC_Os02g05090NANA2+2431134..2431901hypothetical protein
LOC_Os02g05100OsAffx.29313.1.S1_at1/112+2433691..2435973transposon protein, putative, Mutator sub-class
LOC_Os02g05110Os.14919.1.S1_at2/112+2439556..2442914hypothetical protein
LOC_Os02g05110Os.56216.1.S1_at1/112+2439556..2442914hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24107.1.A1_at--143--5651Chr02:2484641..2484665 (25 bp)
GACACCAAGATGTGGGACTCGCCGA
NONE
OsAffx.24107.1.A1_at--652--5031Chr02:2484603..2484627 (25 bp)
GCAGATCTGGCCGTCGGTTCTTATG
NONE
OsAffx.24107.1.A1_at--318--4231Chr02:2484593..2484617 (25 bp)
CCGTCGGTTCTTATGCCGGCGGCGT
NONE
OsAffx.24107.1.A1_at--823--6951Chr02:2484537..2484561 (25 bp)
GTAGCACTCGTCCTCTATCCTGTCG
NONE
OsAffx.24107.1.A1_at--967--511Chr02:2484453..2484477 (25 bp)
ATCGCGGCCGAGATCCACCTTGTCA
NONE
OsAffx.24107.1.A1_at--982--1271Chr02:2484443..2484467 (25 bp)
AGATCCACCTTGTCAGGCAGCGGTA
NONE
OsAffx.24107.1.A1_at--833--9631Chr02:2484431..2484455 (25 bp)
TCAGGCAGCGGTATCGTCTCCATGA
NONE
OsAffx.24107.1.A1_at--425--7172Chr02:2415608..2415632 (25 bp)
GTCTCCATGACGTAGAGATCGTCGC
LOC_Os02g05080
OsAffx.24107.1.A1_at--291--4091Chr02:2484381..2484405 (25 bp)
CGACTTGGTCCAGAACTTGTACTCC
NONE
OsAffx.24107.1.A1_at--907--7252Chr02:2415650..2415674 (25 bp)
GTCCAGAACTTGTACTCCACCATGG
LOC_Os02g05080
OsAffx.24107.1.A1_at--1154--1791Chr02:2484241..2484265 (25 bp)
ACCCGCAGAAGGTCATGTCTATTGG
NONE
Target Sequence 
GACACCAAGATGTGGGACTCGCCGACCACCGCGTACCCGCAGATCTGGCCGTCGGTTCTTATGCCGGCGGCGTGCACGTA
CGGAGGCGGCGGCAGTGGTCGCCAGTAGCACTCGTCCTCTATCCTGTCGCCATCGACGGGGCGTGGTTCACGGTGGATGA
GCGCCTCGAAAGAACGGCCCGGCCGTGCATCGCGGCCGAGATCCACCTTGTCAGGCAGCGGTATCGTCTCCATGACGTAG
AGATCGTCGCCGACGGCGAACGACTTGGTCCAGAACTTGTACTCCACCATGGAGGGCAAGACGCGGACGGTGTGCTCGGC
GGGGTCGTAGAGGATGGCGCGGCGAGTAGTCCTGTCGACGCTGACGATCTTGTCGTCGCTCCTACGCATGAACTCAGTCG
ACCCGCAGAAGGTCATGTCTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24107.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis