Browse Element(s) Details


OsAffx.4916.1.S1_at

Description tigr:9634.m02311
TID=OsAffx.4916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2345010/11retrotransposon protein, putative, unclassified
LOC_Os03g330001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified
LOC_Os06g23460OsAffx.27788.1.S1_at11/116+13689562..13696927KH domain containing protein, expressed
LOC_Os06g23470NANA6+13698713..13699326hypothetical protein
LOC_Os06g23480NANA6+13700073..13700447hypothetical protein
LOC_Os06g23504OsAffx.15579.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.15580.1.S1_at11/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.47883.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.4917.1.S1_at10/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.26924.1.S1_x_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504Os.51220.1.S1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed
LOC_Os06g23504OsAffx.32296.1.A1_at1/116+13703984..13721910DTW domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4916.1.S1_at--666--4254Chr04:10000314..10000339 (25 bp)
CCGGCCCAGGGCTTATAGGATTACT
NONE
OsAffx.4916.1.S1_at--396--10371Chr06:13687560..13687584 (25 bp)
TTTTTTCTGCAAGCCGATCTTCAAA
LOC_Os06g23450
OsAffx.4916.1.S1_at--527--3191Chr06:13687551..13687575 (25 bp)
CAAGCCGATCTTCAAAGAACTTCAG
LOC_Os06g23450
OsAffx.4916.1.S1_at--429--4932Chr06:13687516..13687540 (25 bp)
GCTTGGCTTGGAGCAATTTCGAGAT
LOC_Os06g23450
OsAffx.4916.1.S1_at--499--1911Chr11:10356037..10356057 (21 bp)
ATTTCGAGATGGGTGACCGACTGGA
NONE
OsAffx.4916.1.S1_at--393--5811Chr06:13687487..13687511 (25 bp)
GACCGACTGGAAAATTCTTTCTGAG
LOC_Os06g23450
OsAffx.4916.1.S1_at--458--8151Chr06:13687479..13687503 (25 bp)
GGAAAATTCTTTCTGAGGACAAAGT
LOC_Os06g23450
OsAffx.4916.1.S1_at--829--2431Chr06:13687353..13687472 (25 bp)
AAAAGACATGTGGTGGCCTTTACAA
LOC_Os06g23450
OsAffx.4916.1.S1_at--145--7551NONE
GTGGCCTTTACAATCTAAAGAACCT
NONE
OsAffx.4916.1.S1_at--1137--2731Chr06:13686926..13686950 (25 bp)
AAGAACCTCTACACTTTGCAGATAG
LOC_Os06g23450
OsAffx.4916.1.S1_at--129--2191Chr06:13686916..13686940 (25 bp)
ACACTTTGCAGATAGGGTTGACCCT
LOC_Os06g23450
Target Sequence 
CCGGCCCAGGGCTTATAGGATTACTAGAATACTTATATCAACAAGTTACAACTTTTTTTCTGCAAGCCGATCTTCAAAGA
ACTTCAGGGTTAAGCGTGCTTGGCTTGGAGCAATTTCGAGATGGGTGACCGACTGGAAAATTCTTTCTGAGGACAAAGTG
TGCAGAAAAGACATGTGGTGGCCTTTACAATCTAAAGAACCTCTACACTTTGCAGATAGGGTTGACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis