Browse Element(s) Details


OsAffx.4915.1.S1_at

Description tigr:9634.m02305
TID=OsAffx.4915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2340011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23370Os.49732.1.S1_at11/116+13634938..13639034expressed protein
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed
LOC_Os06g23430Os.1315.1.S1_at11/116+13676509..13680874Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440Os.4711.1.S1_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440Os.57496.1.S1_x_at11/116+13684423..13685178Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450OsAffx.4916.1.S1_at10/116+13686769..13687747retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4915.1.S1_at--937--351Chr06:13663169..13663193 (25 bp)
ATCAAAATTCCTGCTCAACGGGACC
LOC_Os06g23400
OsAffx.4915.1.S1_at--170--2951Chr06:13663196..13663220 (25 bp)
AAGGCTGCCGATCACACACGGTCGT
LOC_Os06g23400
OsAffx.4915.1.S1_at--643--5651Chr06:13663228..13663438 (25 bp)
GACAGGCCATTTGCTTACAATGTTT
LOC_Os06g23400
OsAffx.4915.1.S1_at--225--1631Chr06:13663444..13663468 (25 bp)
AGCGACTAGCCTGAAGACAAACCTT
LOC_Os06g23400
OsAffx.4915.1.S1_at--783--1131Chr06:13663483..13663507 (25 bp)
AGTGCCAATAAGGTGCGACAGCATT
LOC_Os06g23400
OsAffx.4915.1.S1_at--238--2451Chr06:13663517..13663541 (25 bp)
AAAATCCTACATAACTTCCCAGCAA
LOC_Os06g23400
OsAffx.4915.1.S1_at--120--10151Chr06:13663619..13663643 (25 bp)
TATCCTCGACAAAGCAGGCTCATGC
LOC_Os06g23400
OsAffx.4915.1.S1_at--831--911Chr06:13663634..13663658 (25 bp)
AGGCTCATGCCTAGCAAACTGGCAG
LOC_Os06g23400
OsAffx.4915.1.S1_at--145--4871Chr06:13663691..13663715 (25 bp)
GCTTCTAAAAACAGCCCTCACAGTG
LOC_Os06g23400
OsAffx.4915.1.S1_at--1001--10731Chr06:13663731..13663755 (25 bp)
TTGACAACCCTAAAGGTGCCGGCAA
LOC_Os06g23400
OsAffx.4915.1.S1_at--566--8231Chr06:13663751..13663775 (25 bp)
GGCAACCACACTACGTGCAATGGAC
LOC_Os06g23400
Target Sequence 
ATCAAAATTCCTGCTCAACGGGACCCCAAGGCTGCCGATCACACACGGTCGTGGTTTAAGACAGGCCATTTGCTTACAAT
GTTTGGAGAAGCGACTAGCCTGAAGACAAACCTTCAAAAGACACAAGTAGTGCCAATAAGGTGCGACAGCATTGATCTTC
AGAAAATCCTACATAACTTCCCAGCAACTATAAAGAGTTTCCCTATAAAATACCTTGGCTTACCCCCTCTCAATTTCGAA
ACTCAACAAAATCCACTTCCAACCTATCCTCGACAAAGCAGGCTCATGCCTAGCAAACTGGCAGGGCAAGATGATAAATA
CGAAGGACAAATCGATGCTTCTAAAAACAGCCCTCACAGTGCTACCGACCTACCACTTGACAACCCTAAAGGTGCCGGCA
ACCACACTACGTGCAATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis