Browse Element(s) Details


OsAffx.27785.1.S1_at

Description tigr:9634.m02303
TID=OsAffx.27785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2338011/11IQ calmodulin-binding motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23330NANA6+13621967..13622431hypothetical protein
LOC_Os06g23340OsAffx.18924.2.S1_x_at7/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.2.S1_at2/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.18924.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350Os.55197.1.S1_at11/116+13629102..13630409Seed maturation protein, expressed
LOC_Os06g23360Os.54783.1.S1_at11/116+13630843..13631939expressed protein
LOC_Os06g23370Os.49732.1.S1_at11/116+13634938..13639034expressed protein
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27785.1.S1_at--665--4711Chr06:13646672..13646696 (25 bp)
GCTGGCTGGCCACCGTCAGGAAGGT
LOC_Os06g23380
OsAffx.27785.1.S1_at--902--3971Chr06:13646890..13646914 (25 bp)
CGGTGGAGATACTCTCGATGGAGCA
LOC_Os06g23380
OsAffx.27785.1.S1_at--919--6031Chr06:13646895..13646919 (25 bp)
GAGATACTCTCGATGGAGCACTTCC
LOC_Os06g23380
OsAffx.27785.1.S1_at--598--311Chr06:13646898..13646922 (25 bp)
ATACTCTCGATGGAGCACTTCCCGG
LOC_Os06g23380
OsAffx.27785.1.S1_at--1136--8351Chr06:13646964..13646988 (25 bp)
GGCGGATCCGCCTTCGGCAGGGAGC
LOC_Os06g23380
OsAffx.27785.1.S1_at--1162--4691Chr06:13646987..13647011 (25 bp)
GCGGCTGCACGTCGGCCGTGACGAG
LOC_Os06g23380
OsAffx.27785.1.S1_at--1049--1071Chr06:13647054..13647078 (25 bp)
AGGGCGGTGAGGAACGCGGCCGCGC
LOC_Os06g23380
OsAffx.27785.1.S1_at--969--3991Chr06:13647113..13647137 (25 bp)
CGTGCGCATCCAGGCGTTCTACAGA
LOC_Os06g23380
OsAffx.27785.1.S1_at--100--4591Chr06:13647116..13647140 (25 bp)
GCGCATCCAGGCGTTCTACAGAGGA
LOC_Os06g23380
OsAffx.27785.1.S1_at--985--4331Chr06:13647122..13647146 (25 bp)
CCAGGCGTTCTACAGAGGATACTTG
LOC_Os06g23380
OsAffx.27785.1.S1_at--503--6731Chr06:13647128..13647323 (25 bp)
GTTCTACAGAGGATACTTGATACAA
LOC_Os06g23380
Target Sequence 
GCTGGCTGGCCACCGTCAGGAAGGTCTTCAAGCCGGGGACCTCCAAGGACCCTCGCCTCGCCAAGAAGCAGAGGGGAGGA
GACGAGAATGCTGCGGGAGGAGGCGGCGGCGGCGTCGGCCAGGCGGTGGAGATACTCTCGATGGAGCACTTCCCGGCCGC
CGAGACGTCGCCGGAGGTGACGACGAATGAAGGAAGCGGCGGATCCGCCTTCGGCAGGGAGCGGCTGCACGTCGGCCGTG
ACGAGGCGGAGGGCGCCTGGAGGGCCCGCCGCGGCATGGCGGCGTCGAGGGCGGTGAGGAACGCGGCCGCGCGCGGGAGG
GCGGCCGGCAGGGAGGAGCGCGCCGCCGTGCGCATCCAGGCGTTCTACAGAGGATACTTGATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis