Browse Element(s) Details


OsAffx.27786.1.S1_at

Description tigr:9634.m02304
TID=OsAffx.27786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g233909/11IQ calmodulin-binding motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23340OsAffx.18924.2.S1_x_at7/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.2.S1_at2/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.18924.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350Os.55197.1.S1_at11/116+13629102..13630409Seed maturation protein, expressed
LOC_Os06g23360Os.54783.1.S1_at11/116+13630843..13631939expressed protein
LOC_Os06g23370Os.49732.1.S1_at11/116+13634938..13639034expressed protein
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein
LOC_Os06g23410OsAffx.27787.1.S1_at10/116+13668057..13670847hypothetical protein
LOC_Os06g23420Os.54057.1.S1_at11/116+13673055..13675419Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27786.1.S1_at--1031--4511NONE
GCCCGGAGCCGAATGGTTTTTGTTG
NONE
OsAffx.27786.1.S1_at--395--1191Chr06:13650389..13650413 (25 bp)
AGTAGTCTGGCATCTTTGTGTGCCC
LOC_Os06g23390
OsAffx.27786.1.S1_at--870--8691Chr06:13650407..13650431 (25 bp)
TGTGCCCTGATTGCTGATCATCTAA
LOC_Os06g23390
OsAffx.27786.1.S1_at--654--2931NONE
AAGGCAAGCCCTTCTGATTCAGATA
NONE
OsAffx.27786.1.S1_at--678--7651Chr06:13650944..13650968 (25 bp)
GGGAGTCCATTGTGTACTGCCAACC
LOC_Os06g23390
OsAffx.27786.1.S1_at--363--7011Chr06:13650957..13650981 (25 bp)
GTACTGCCAACCAGCACTATCATTT
LOC_Os06g23390
OsAffx.27786.1.S1_at--311--431Chr06:13650975..13650999 (25 bp)
ATCATTTCCCGACTGCTGCATTGGA
LOC_Os06g23390
OsAffx.27786.1.S1_at--940--9051Chr06:13650991..13651015 (25 bp)
TGCATTGGACTCTCCATTGGTGACT
LOC_Os06g23390
OsAffx.27786.1.S1_at--621--5971Chr06:13651040..13651060 (21 bp)
GAGAACTGCTCCAACTGGCTGAATA
LOC_Os06g23390
OsAffx.27786.1.S1_at--824--7711Chr06:13651113..13651137 (25 bp)
GGGTGAGTACGACGATCCCCTCATC
LOC_Os06g23390
OsAffx.27786.1.S1_at--216--4191Chr06:13651130..13651154 (25 bp)
CCCTCATCGAGTCATACAACGGTGA
LOC_Os06g23390
Target Sequence 
GCCCGGAGCCGAATGGTTTTTGTTGGGAGATTTGATTTGGAGAGTGAGAAGGGGATGATGAGTAGTCTGGCATCTTTGTG
TGCCCTGATTGCTGATCATCTAAAGGTTCTACAAAAAAAAAGGCAAGCCCTTCTGATTCAGATAGGGGAGTCCATTGTGT
ACTGCCAACCAGCACTATCATTTCCCGACTGCTGCATTGGACTCTCCATTGGTGACTCCAGTGGATACAATGTAGATATA
GGAGAACTGCTCCAACTGGCTGAATATGGGGGTGAGTACGACGATCCCCTCATCGAGTCATACAACGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis