Browse Element(s) Details

Os.54783.1.S1_at

Description

gb:AK106755.1
DB_XREF= gi:32991964
TID=Os.54783.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D06, full insert sequence.
FL= gb:AK106755.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23360	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23300	OsAffx.15574.1.S1_at	11/11	6	+	13609068..13609642	hypothetical protein
LOC_Os06g23310	OsAffx.15575.1.S1_at	11/11	6	+	13615320..13615867	hypothetical protein
LOC_Os06g23320	OsAffx.20497.1.S1_at	2/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.31287.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.3348.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320	OsAffx.22387.1.S1_at	1/11	6	+	13617970..13621420	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330	NA	NA	6	+	13621967..13622431	hypothetical protein
LOC_Os06g23340	OsAffx.18924.2.S1_x_at	7/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.2.S1_at	2/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.19421.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340	OsAffx.18924.1.S1_at	1/11	6	+	13624304..13627908	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350	Os.55197.1.S1_at	11/11	6	+	13629102..13630409	Seed maturation protein, expressed
LOC_Os06g23360	Os.54783.1.S1_at	11/11	6	+	13630843..13631939	expressed protein
LOC_Os06g23370	Os.49732.1.S1_at	11/11	6	+	13634938..13639034	expressed protein
LOC_Os06g23380	OsAffx.27785.1.S1_at	11/11	6	+	13646635..13647353	IQ calmodulin-binding motif family protein
LOC_Os06g23390	OsAffx.27786.1.S1_at	9/11	6	+	13648911..13651230	IQ calmodulin-binding motif family protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54783.1.S1_at--747--871	1	Chr06:13631323..13631448 (25 bp)	TGTCTTGCCAAGTGCCGGTGCAGGA	LOC_Os06g23360
Os.54783.1.S1_at--1085--341	1	Chr06:13631475..13631499 (25 bp)	CAGAGGCAGCAACCGCGACCGAGAC	LOC_Os06g23360
Os.54783.1.S1_at--1061--705	1	Chr06:13631531..13631555 (25 bp)	GTAATGCCTCCATCCAAGAAGTCGA	LOC_Os06g23360
Os.54783.1.S1_at--819--145	1	Chr06:13631661..13631685 (25 bp)	AGAAGACAGCCAGCCGCAGCGAAGC	LOC_Os06g23360
Os.54783.1.S1_at--155--767	1	Chr06:13631711..13631735 (25 bp)	GGGATCAGAACACACCTCCTGACGT	LOC_Os06g23360
Os.54783.1.S1_at--680--175	1	Chr06:13631724..13631748 (25 bp)	ACCTCCTGACGTTTGTGGTGGTCAT	LOC_Os06g23360
Os.54783.1.S1_at--389--833	1	Chr06:13631749..13631773 (25 bp)	GGCTGCATTTTGGTTCTCAATTATA	LOC_Os06g23360
Os.54783.1.S1_at--486--703	1	Chr06:13631812..13631836 (25 bp)	GTAAATAGTGTATAGGCTTGCCCCT	LOC_Os06g23360
Os.54783.1.S1_at--19--1071	1	Chr06:13631829..13631853 (25 bp)	TTGCCCCTTTGGTCATGGAGCATAA	LOC_Os06g23360
Os.54783.1.S1_at--740--891	1	Chr06:13631879..13631903 (25 bp)	TGACCACTAATTTTTGTAACAGCCA	LOC_Os06g23360
Os.54783.1.S1_at--295--23	1	Chr06:13631915..13631939 (25 bp)	ATATATGAAGGCATCTCTCCAGACG	LOC_Os06g23360

Target Sequence

TGTCTTGCCAAGTGCCGGTGCAGGAGCAGACGGACGCGCCACCGGCAGCAACAGAGGCAGCAACCGCGACCGAGACCACC
GTCGATTCACCACCACCTCAGGCCGTCGTAATGCCTCCATCCAAGAAGTCGAAGAGGAGCGCCGACGGTGAGAATGCTGA
TGACGATCAGGGGATGAACGGGAACTATGGCAACGGCTACGGCAGCGGCAACGGCAAAGGCAACGGCGGAGCTAAGAAGA
AGACAGCCAGCCGCAGCGAAGCACGCCGGCGTACCAACGTCGACGAGGGGATCAGAACACACCTCCTGACGTTTGTGGTG
GTCATGGCTGCATTTTGGTTCTCAATTATATGATCAGTTAATAATAGGCTTGTAACTGCAAAGTTCAGGTAAATAGTGTA
TAGGCTTGCCCCTTTGGTCATGGAGCATAATATGTTCTCCAAAAAAAAAAAAAACTATGACCACTAATTTTTGTAACAGC
CAATGACATCATAATATATGAAGGCATCTCTCCAGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis