Browse Element(s) Details


Os.55197.1.S1_at

Description gb:AK107654.1
DB_XREF= gi:32992863
TID=Os.55197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-G03, full insert sequence.
FL= gb:AK107654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2335011/11Seed maturation protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23300OsAffx.15574.1.S1_at11/116+13609068..13609642hypothetical protein
LOC_Os06g23310OsAffx.15575.1.S1_at11/116+13615320..13615867hypothetical protein
LOC_Os06g23320OsAffx.20497.1.S1_at2/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.31287.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.3348.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.22387.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330NANA6+13621967..13622431hypothetical protein
LOC_Os06g23340OsAffx.18924.2.S1_x_at7/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.2.S1_at2/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.18924.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350Os.55197.1.S1_at11/116+13629102..13630409Seed maturation protein, expressed
LOC_Os06g23360Os.54783.1.S1_at11/116+13630843..13631939expressed protein
LOC_Os06g23370Os.49732.1.S1_at11/116+13634938..13639034expressed protein
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0006873biological_processcell ion homeostasis
GO:0007275biological_processdevelopment
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0010226biological_processresponse to lithium ion
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55197.1.S1_at--423--4371Chr06:13629729..13629753 (25 bp)
CCAAGATAACCGTGGGCGAGGCGCT
LOC_Os06g23350
Os.55197.1.S1_at--1019--1851Chr06:13629837..13629861 (25 bp)
AAGGGTCCGACGTGACCATGCCCGG
LOC_Os06g23350
Os.55197.1.S1_at--481--1851Chr06:13629918..13629942 (25 bp)
ACGACGACAAGATCACGGTGGGCGA
LOC_Os06g23350
Os.55197.1.S1_at--982--8651Chr06:13629936..13630068 (25 bp)
TGGGCGATGTCCTCACGGACGCGAC
LOC_Os06g23350
Os.55197.1.S1_at--965--8951Chr06:13630241..13630265 (25 bp)
TGAACCAGTCCCCTGTACTTTTTTG
LOC_Os06g23350
Os.55197.1.S1_at--995--10351Chr06:13630259..13630283 (25 bp)
TTTTTTGTGGTATCACTGTGCCGGC
LOC_Os06g23350
Os.55197.1.S1_at--976--9851Chr06:13630287..13630311 (25 bp)
TACACAGCTAGTGCGTGTCCCTGTA
LOC_Os06g23350
Os.55197.1.S1_at--285--9311Chr06:13630304..13630328 (25 bp)
TCCCTGTACCTTTTGCGTGTGTATA
LOC_Os06g23350
Os.55197.1.S1_at--104--4671Chr06:13630318..13630342 (25 bp)
GCGTGTGTATATGCTGCAGTCAGAT
LOC_Os06g23350
Os.55197.1.S1_at--386--1171Chr06:13630344..13630368 (25 bp)
AGTCAAGCGTGTGATGTCACCTGTT
LOC_Os06g23350
Os.55197.1.S1_at--310--7111Chr06:13630359..13630383 (25 bp)
GTCACCTGTTGCTGTGGACACAAAT
LOC_Os06g23350
Target Sequence 
CCAAGATAACCGTGGGCGAGGCGCTGGAGGCGACGGCGCTGGCCGCGGGCGAACGTCCGGTGGACAGGACGGACGTGGAG
GCCATCCGCGCGGCGGAGATGGCGGCGCAAGGGTCCGACGTGACCATGCCCGGCGGCCTCGCCGACCAGGCGCAGGCGGC
GGCGCGCTCCAACGCCGACGCCGACCGCGACGACGACAAGATCACGGTGGGCGATGTCCTCACGGACGCGACGGCGAAGC
TGGCGGGGGACAAGGTGGCGGGGGCAGAGGACGCGGCGAAGGTTGTGCAGGCGGAGACGTACAGCGACGCCGCAGCGCGG
ACCAGGGCCGGCGGGGTGGGCGCCGCGGTGTCCACGGCGGCGAGGCTCAACCAAGCCGACGACGACGCCGATGACGACGC
TGAGTGAACCAGTCCCCTGTACTTTTTTGTGGTATCACTGTGCCGGCCCGTACACAGCTAGTGCGTGTCCCTGTACCTTT
TGCGTGTGTATATGCTGCAGTCAGATGAGTCAAGCGTGTGATGTCACCTGTTGCTGTGGACACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis