Browse Element(s) Details


Os.49732.1.S1_at

Description gb:AK067335.1
DB_XREF= gi:32977353
TID=Os.49732.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104A06, full insert sequence.
FL= gb:AK067335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23310OsAffx.15575.1.S1_at11/116+13615320..13615867hypothetical protein
LOC_Os06g23320OsAffx.20497.1.S1_at2/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.31287.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.3348.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.22387.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330NANA6+13621967..13622431hypothetical protein
LOC_Os06g23340OsAffx.18924.2.S1_x_at7/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.2.S1_at2/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.18924.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350Os.55197.1.S1_at11/116+13629102..13630409Seed maturation protein, expressed
LOC_Os06g23360Os.54783.1.S1_at11/116+13630843..13631939expressed protein
LOC_Os06g23370Os.49732.1.S1_at11/116+13634938..13639034expressed protein
LOC_Os06g23380OsAffx.27785.1.S1_at11/116+13646635..13647353IQ calmodulin-binding motif family protein
LOC_Os06g23390OsAffx.27786.1.S1_at9/116+13648911..13651230IQ calmodulin-binding motif family protein
LOC_Os06g23400OsAffx.4915.1.S1_at11/116+13663130..13663813hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49732.1.S1_at--936--1351Chr06:13636377..13636401 (25 bp)
AGACCTTTTGGTGGGTCAGGTTCAT
LOC_Os06g23370
Os.49732.1.S1_at--571--6471Chr06:13635559..13635583 (25 bp)
GATACATTCAGTGAAGCTCGGCCTA
LOC_Os06g23370
Os.49732.1.S1_at--532--4811Chr06:13635544..13635568 (25 bp)
GCTCGGCCTAATGGCTTCAGTATTA
LOC_Os06g23370
Os.49732.1.S1_at--144--5951Chr06:13635238..13635261 (24 bp)
GAGAAGGTCATTGTCAAAGCGTAAA
LOC_Os06g23370
Os.49732.1.S1_at--882--2411Chr06:13635216..13635240 (25 bp)
AAAAAGCCTGCTAATGGACTCGGAG
LOC_Os06g23370
Os.49732.1.S1_at--180--851Chr06:13635203..13635227 (25 bp)
ATGGACTCGGAGGAGCCACTGACGT
LOC_Os06g23370
Os.49732.1.S1_at--366--3331Chr06:13635187..13635211 (25 bp)
CACTGACGTGCCACCAGATGTATAA
LOC_Os06g23370
Os.49732.1.S1_at--1059--8251Chr06:13635124..13635148 (25 bp)
GGCAGAGTGGCAGCACCTAGTTAAT
LOC_Os06g23370
Os.49732.1.S1_at--475--211Chr06:13635066..13635090 (25 bp)
ATATTGCACATGAAGCCATCAGCTA
LOC_Os06g23370
Os.49732.1.S1_at--935--2391Chr06:13634983..13635007 (25 bp)
AAACTTGGTAATGTATTGCCTGACT
LOC_Os06g23370
Os.49732.1.S1_at--1055--10691Chr06:13634968..13634992 (25 bp)
TTGCCTGACTGGATCTCTTTTTTAG
LOC_Os06g23370
Target Sequence 
AGACCTTTTGGTGGGTCAGGTTCATNGACAGAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAA
TGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAG
TAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTA
ACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGA
CGTGCCACCAGATGTATAAATNGTTCCGTTTATTGTCCTTCNTGTATAGGGCTTTTNGGCAGAGTGGCAGCACCTAGTTA
ATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAA
CAATCTGAGCAATAATTTCATGTTTCTTGNTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis