Browse Element(s) Details


OsAffx.18924.1.S1_at

Description tigr:9638.m00169
TID=OsAffx.18924.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0264011/11hypothetical protein
LOC_Os06g233401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02600Os.51841.1.S1_x_at1/1110+976794..979110Zinc knuckle family protein
LOC_Os10g02610NANA10+982312..983598hypothetical protein
LOC_Os10g02620Os.23269.1.S1_s_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.23269.1.S1_x_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.20496.2.S1_a_at1/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02630Os.4669.3.S1_x_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02630Os.4669.1.S1_a_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02640OsAffx.18924.1.S1_at11/1110+1003645..1006125hypothetical protein
LOC_Os10g02640OsAffx.18924.2.S1_x_at3/1110+1003645..1006125hypothetical protein
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18924.1.S1_at--393--8091Chr10:1004295..1004319 (25 bp)
GGAGCGGGCCTTGTCTACTCCAAGT
LOC_Os10g02640
OsAffx.18924.1.S1_at--514--1992Chr10:1004311..1004335 (25 bp)
ACTCCAAGTCTATTTCTCCGATATG
LOC_Os10g02640
OsAffx.18924.1.S1_at--874--251Chr10:1004331..1004432 (25 bp)
ATATGCATTCCCTCTTCTGATGAAT
LOC_Os10g02640
OsAffx.18924.1.S1_at--726--1671Chr10:1004441..1004465 (25 bp)
AGCCGAAGCGATGAGAAAGCCTGTC
LOC_Os10g02640
OsAffx.18924.1.S1_at--61--8171Chr10:1004594..1004618 (25 bp)
GGAAAAACTGCTCGATGTCACTACT
LOC_Os10g02640
OsAffx.18924.1.S1_at--523--3811Chr10:1004601..1004625 (25 bp)
CTGCTCGATGTCACTACTTACGTAG
LOC_Os10g02640
OsAffx.18924.1.S1_at--81--611Chr10:1005140..1005164 (25 bp)
ATGCGGATATTACACCAGCGAGTTC
LOC_Os10g02640
OsAffx.18924.1.S1_at--249--10171Chr10:1005147..1005171 (25 bp)
TATTACACCAGCGAGTTCCTAAGGG
LOC_Os10g02640
OsAffx.18924.1.S1_at--242--10691Chr10:1005185..1005291 (25 bp)
TTGCGCGAATTACAACGAGCTTCCA
LOC_Os10g02640
OsAffx.18924.1.S1_at--198--1352Chr10:1006041..1006063 (23 bp)
AGAGTATCTAACAAAGCCTTATCAG
LOC_Os10g02640
OsAffx.18924.1.S1_at--480--1571Chr10:1006062..1006086 (25 bp)
AGCTCTGGGCGTTCCTAGCCGAAAT
LOC_Os10g02640
Target Sequence 
GGAGCGGGCCTTGTCTACTCCAAGTCTATTTCTCCGATATGCATTCCCTCTTCTGATGAATTACATGGAAGCCGAAGCGA
TGAGAAAGCCTGTCGGCTACCTAAACTCGTGCAGGATAAGTCAGCCGAACCACACATACACGCTAGATGAGAGGAAGCTA
CCGGAACACATCAAGGCGATGACTCCCGAAGAGAGGACAACTTACATAGGGCAAAGGCATCAGGAAAAACTGCTCGATGT
CACTACTTACGTAGCTATAGCGCTTCAATCTACGCAGGACAAGGAGTGCGTTTATGCCCCATATGCCTTTGATGCATTTA
AAAGGTATTACCAGCAAGGCGGACAACGCAAAAAATCAAGAGAACGCATATTCGTCCGCAATAAGTGGCCGTGTCACAAG
CAACCGGTGGGAACCGTACTATGCGGATATTACACCAGCGAGTTCCTAAGGGGTAATGGGAAATATTGCGCGAATTACAA
CGAGCTTCCAAAATTCCCCAAGTCTGAAAGAGTATCTAACAAAGCCTTATCAGCTCTGGGCGTTCCTAGCCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis