Browse Element(s) Details


OsAffx.20792.1.S1_at

Description tigr:9638.m00170
TID=OsAffx.20792.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative PPR-repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0265011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02630Os.4669.3.S1_x_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02630Os.4669.1.S1_a_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02640OsAffx.18924.1.S1_at11/1110+1003645..1006125hypothetical protein
LOC_Os10g02640OsAffx.18924.2.S1_x_at3/1110+1003645..1006125hypothetical protein
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20792.1.S1_at--671--1951Chr10:1019468..1019492 (25 bp)
ACTGGTATTCTTCCCAATCATGTGA
LOC_Os10g02650
OsAffx.20792.1.S1_at--357--2091Chr10:1019404..1019428 (25 bp)
ACATCAACCATGCTATCCAACTATT
LOC_Os10g02650
OsAffx.20792.1.S1_at--75--8311Chr10:1019317..1019341 (25 bp)
GGCTTTCTCTTGCTGGACGAATGAA
LOC_Os10g02650
OsAffx.20792.1.S1_at--323--8271Chr10:1019255..1019279 (25 bp)
GGCTTTGTTCCTAGTAAGGCTTCCT
LOC_Os10g02650
OsAffx.20792.1.S1_at--280--5351Chr10:1019168..1019192 (25 bp)
GAAGATATGCTTTTCCAGGGTTATA
LOC_Os10g02650
OsAffx.20792.1.S1_at--108--7671Chr10:1019151..1019175 (25 bp)
GGGTTATACTCCACGATATGCCAAC
LOC_Os10g02650
OsAffx.20792.1.S1_at--402--9211Chr10:1019133..1019157 (25 bp)
TGCCAACTACACTTCTTTGCTATTG
LOC_Os10g02650
OsAffx.20792.1.S1_at--178--931Chr10:1018218..1018242 (25 bp)
AACTCCAACCTCACAGTACTTGGTA
LOC_Os10g02650
OsAffx.20792.1.S1_at--773--7012Chr06:13057088..13057107 (20 bp)
GTACTTGGTATCTAACTGGTCTTTT
NONE
OsAffx.20792.1.S1_at--87--7151Chr10:1018185..1018209 (25 bp)
GTCTTTTGGTTCACTTGCTACAGGA
LOC_Os10g02650
OsAffx.20792.1.S1_at--804--8211Chr10:1018155..1018179 (25 bp)
GGAATATGTGGCACTGCATGCGTTC
LOC_Os10g02650
Target Sequence 
ACTGGTATTCTTCCCAATCATGTGACGTATACTATACTCATGAATAATCAAATAAGATTAGGAGACATCAACCATGCTAT
CCAACTATTTAACTCATTGAACAGTGACGGATGTGTCTTTGATAAGATAACATACAACACTTTTATTAAGGGGCTTTCTC
TTGCTGGACGAATGAAAGAAGCACTTTCGTTTTTATTGATGATGCACAAAAGAGGCTTTGTTCCTAGTAAGGCTTCCTAT
GACAAACTAATGGAGCTTCTTCTTGCTGAAAATGCAATTGATATTGTCCTACAGTTATTTGAAGATATGCTTTTCCAGGG
TTATACTCCACGATATGCCAACTACACTTCTTTGCTATTGGTACTTGCAAAAGATGGACGATGGAGTGAGGCTGACAGGA
TTTTTACAATGATGCTGAAGAAAAGGAAGATGTTTATAAATTGGTGGGAGATCACAAAGACAGAACTCAGGATGCTTCAG
GAAACTCCAACCTCACAGTACTTGGTATCTAACTGGTCTTTTGGTTCACTTGCTACAGGACAAAGGGAATATGTGGCACT
GCATGCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis