Browse Element(s) Details


OsAffx.18093.1.S1_at

Description tigr:9638.m00174
TID=OsAffx.18093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18093.1.S1_at--1140--1611Chr10:1039892..1039916 (25 bp)
AGCTGGGAGTCCTTGTCATGGAGTT
LOC_Os10g02690
OsAffx.18093.1.S1_at--249--4731Chr10:1039891..1039915 (25 bp)
GCTGGGAGTCCTTGTCATGGAGTTC
LOC_Os10g02690
OsAffx.18093.1.S1_at--567--3891Chr10:1039890..1039914 (25 bp)
CTGGGAGTCCTTGTCATGGAGTTCT
LOC_Os10g02690
OsAffx.18093.1.S1_at--1094--3491Chr10:1039876..1039900 (25 bp)
CATGGAGTTCTACCCGTCTGACGTC
LOC_Os10g02690
OsAffx.18093.1.S1_at--481--8031Chr10:1039873..1039897 (25 bp)
GGAGTTCTACCCGTCTGACGTCGGC
LOC_Os10g02690
OsAffx.18093.1.S1_at--902--1191Chr10:1039871..1039895 (25 bp)
AGTTCTACCCGTCTGACGTCGGCGC
LOC_Os10g02690
OsAffx.18093.1.S1_at--882--3331Chr10:1039639..1039661 (23 bp)
CACGGCCATGACCTGGAAGGACGCA
LOC_Os10g02690
OsAffx.18093.1.S1_at--130--1951Chr10:1039639..1039660 (22 bp)
ACGGCCATGACCTGGAAGGACGCAG
LOC_Os10g02690
OsAffx.18093.1.S1_at--383--4431Chr10:1039224..1039657 (25 bp)
GCCATGACCTGGAAGGACGCAGCGC
LOC_Os10g02690
OsAffx.18093.1.S1_at--323--3511Chr10:1039222..1039655 (25 bp)
CATGACCTGGAAGGACGCAGCGCGC
LOC_Os10g02690
OsAffx.18093.1.S1_at--559--691Chr10:1039221..1039654 (25 bp)
ATGACCTGGAAGGACGCAGCGCGCT
LOC_Os10g02690
Target Sequence 
AGCTGGGAGTCCTTGTCATGGAGTTCTACCCGTCTGACGTCGGCGCCCTCGCCATGACCCTCCAGCTTTGGAACTCGGTG
CTCATGGAGGTCATGGGCGTCGGCGTGGAGATGGAGGGATGGCTGGAAGAGCTTGTCATGGCCAACGAGGTGGAGGCGAA
GGTGAGGTTGGCCATGGAGTCCGAGCAAGGAAAGAAGCTCAGAGACCACGTCGAGGCGCGCAGGGAAGCCACGGCCATGA
CCTGGAAGGACGCAGCGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis