Browse Element(s) Details


OsAffx.20791.1.S1_at

Description gb:NM_194609.1
DB_XREF= gi:37530577
TID=OsAffx.20791.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0023I19.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0271011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20791.1.S1_at--807--1311Chr10:1045491..1045515 (25 bp)
AGATGGCGCCAACCATCAACGCCGG
LOC_Os10g02710
OsAffx.20791.1.S1_at--652--5831Chr10:1045439..1045463 (25 bp)
GACCTCTACGATGCCATCATCAAGG
LOC_Os10g02710
OsAffx.20791.1.S1_at--760--3951Chr10:1045414..1045438 (25 bp)
CGGAGCAACAAAGCCTGTGCGCCAG
LOC_Os10g02710
OsAffx.20791.1.S1_at--1091--8691Chr10:1045399..1045423 (25 bp)
TGTGCGCCAGCGTGCAAGAAGCCTA
LOC_Os10g02710
OsAffx.20791.1.S1_at--132--1451Chr10:1045383..1045407 (25 bp)
AGAAGCCTACGACCCTGCGGCGCAA
LOC_Os10g02710
OsAffx.20791.1.S1_at--335--9131Chr10:1045368..1045392 (25 bp)
TGCGGCGCAAGCAGCGTTCCTGGCC
LOC_Os10g02710
OsAffx.20791.1.S1_at--736--6691Chr10:1045353..1045377 (25 bp)
GTTCCTGGCCTCATGCAAGGCGAGG
LOC_Os10g02710
OsAffx.20791.1.S1_at--1138--931Chr10:1045324..1045348 (25 bp)
AGGAATCACCGGTCGCCATGTCGCT
LOC_Os10g02710
OsAffx.20791.1.S1_at--817--1411Chr10:1045281..1045305 (25 bp)
AGACAAGACTCTATCTCTCGCCGGA
LOC_Os10g02710
OsAffx.20791.1.S1_at--515--1431Chr10:1045218..1045242 (25 bp)
AGAAGCCATCTCCACAAGTAGTCCG
LOC_Os10g02710
OsAffx.20791.1.S1_at--1097--2811Chr10:1045203..1045227 (25 bp)
AAGTAGTCCGCAAGAAGTCCTTCTG
LOC_Os10g02710
Target Sequence 
AGATGGCGCCAACCATCAACGCCGGCGTCGCCCATGCAAGACAACCACACTCGACCTCTACGATGCCATCATCAAGGCGG
AGCAACAAAGCCTGTGCGCCAGCGTGCAAGAAGCCTACGACCCTGCGGCGCAAGCAGCGTTCCTGGCCTCATGCAAGGCG
AGGCTGCAGGAATCACCGGTCGCCATGTCGCTGCTGGTGCAGGAGAACGGAGACAAGACTCTATCTCTCGCCGGAGGATG
TCGGGTACCTCGCCGGCGTGTTGCTCGCAGAGCAGAAGCCATCTCCACAAGTAGTCCGCAAGAAGTCCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis