Browse Element(s) Details


Os.11391.1.S1_at

Description gb:AK110804.1
DB_XREF= gi:32996013
TID=Os.11391.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative purple acid phosphatase (OSJNBa0023I19.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E10, full insert sequence.
FL= gb:AK110804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0275011/11Acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016311biological_processdephosphorylation
GO:0030643biological_processphosphate ion homeostasis
GO:0009986cellular_componentcell surface
GO:0003993molecular_functionacid phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11391.1.S1_at--785--8891Chr10:1068425..1068449 (25 bp)
TGAGTGCCCATGGAGACACCCAGGA
LOC_Os10g02750
Os.11391.1.S1_at--41--2591Chr10:1068570..1068594 (25 bp)
AACGGTGTCGATTTCTACATCAATG
LOC_Os10g02750
Os.11391.1.S1_at--1082--791Chr10:1068592..1068616 (25 bp)
ATGGGCATGATCACTGCCTGGAGCA
LOC_Os10g02750
Os.11391.1.S1_at--674--5611Chr10:1068781..1068805 (25 bp)
GACAAGCTCCAGTTCTTCTATGATG
LOC_Os10g02750
Os.11391.1.S1_at--388--2891Chr10:1068809..1068833 (25 bp)
AAGGGTTCCTGTCACTTGAGCTCAG
LOC_Os10g02750
Os.11391.1.S1_at--294--7351Chr10:1068833..1068857 (25 bp)
GTGAGAACCGAGCTCGATTCGCCTT
LOC_Os10g02750
Os.11391.1.S1_at--342--4431Chr10:1068853..1068877 (25 bp)
GCCTTCTACGACGTTTTCGGTGAAG
LOC_Os10g02750
Os.11391.1.S1_at--606--4871Chr10:1068877..1068901 (25 bp)
GCTTTGTACCACTGGAGCTTCAGCA
LOC_Os10g02750
Os.11391.1.S1_at--107--2911Chr10:1068916..1068940 (25 bp)
AAGGTTCAGTCCTCTGCTAGTGTAA
LOC_Os10g02750
Os.11391.1.S1_at--679--1471Chr10:1068969..1068993 (25 bp)
AGAATACATTCCCACACAGCTGAGT
LOC_Os10g02750
Os.11391.1.S1_at--122--8731Chr10:1068997..1069021 (25 bp)
TGTCTACCTGCATAATTCTACTTGT
LOC_Os10g02750
Target Sequence 
TGAGTGCCCATGGAGACACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTACATC
AATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGNAACAGTCCAATTCAGTACTTNCACTAGTGGAGGCGGNTCAA
AGGCATGGAGNAGGCATTTTTCAACAAAACGAAGACAAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGA
GCTCAGTGAGAACCGAGCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTA
ATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATACATTCCCACACAG
CTGAGTAGATGTCTACCTGCATAATTCTACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis