Browse Element(s) Details


Os.26648.1.S1_at

Description gb:AK121038.1
DB_XREF= gi:37990661
TID=Os.26648.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0023I19.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051E10, full insert sequence.
FL= gb:AK121038.1 gb:AK060266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0276011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26648.1.S1_at--764--1311Chr10:1069837..1069861 (25 bp)
AGATGGTGGTAGCTCTGTTGCCCAT
LOC_Os10g02760
Os.26648.1.S1_at--298--8811Chr10:1069780..1069804 (25 bp)
TGTTGTCGCAAAGTAGGCTGGCTAC
LOC_Os10g02760
Os.26648.1.S1_at--805--4711Chr10:1069764..1069788 (25 bp)
GCTGGCTACAAGATCTCTGTTATCT
LOC_Os10g02760
Os.26648.1.S1_at--608--6091Chr10:1069659..1069683 (25 bp)
GAGTAAGTGCTATGCTCTTGGAAAT
LOC_Os10g02760
Os.26648.1.S1_at--578--5091Chr10:1069631..1069655 (25 bp)
GCACGACAGCGTGATGCTCAAGATC
LOC_Os10g02760
Os.26648.1.S1_at--970--10531Chr10:1069551..1069575 (25 bp)
TTCATCTTCTCTACGGCGTCATTAG
LOC_Os10g02760
Os.26648.1.S1_at--187--4651Chr10:1069536..1069560 (25 bp)
GCGTCATTAGAGCAGCGGGACCAAT
LOC_Os10g02760
Os.26648.1.S1_at--373--4671Chr10:1069522..1069546 (25 bp)
GCGGGACCAATTATGATGCTTTTTT
LOC_Os10g02760
Os.26648.1.S1_at--944--171Chr10:1069473..1069497 (25 bp)
ATTTTTGTATGTTATGAGCCTCCCA
LOC_Os10g02760
Os.26648.1.S1_at--500--5871Chr10:1069458..1069482 (25 bp)
GAGCCTCCCATTTGCTCATGGAGTG
LOC_Os10g02760
Os.26648.1.S1_at--293--5591Chr10:1069359..1069383 (25 bp)
GAAATTTGCATCCTACCGTGGGAGA
LOC_Os10g02760
Target Sequence 
AGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCT
ACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGNCNAAGTGGTTACAGGAGTTTCCA
AACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTT
TGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGG
ACCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGG
AGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTTGTTGCATAACGAATCNGA
AATTTGCATCCTACCGTGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis