Browse Element(s) Details


OsAffx.18095.1.S1_x_at

Description tigr:9638.m00184
TID=OsAffx.18095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0278011/11hypothetical protein
LOC_Os01g475001/11hypothetical protein
LOC_Os02g405401/11hypothetical protein
LOC_Os11g451401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18095.1.S1_x_at--230--3991Chr10:1093045..1093069 (25 bp)
CGGGCAACGCCGGCAGGTGGACATG
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--54--7991Chr10:1093306..1093330 (25 bp)
GGATGCAGGCGCGGCTCTGGTGGTG
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--1094--10852Chr10:1093917..1093941 (25 bp)
TTGGCCGGTTCGATGACGATGACGC
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--711--5772Chr10:1093931..1093955 (25 bp)
GACGATGACGCCGTTGGCGCCGTTT
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--984--5291Chr10:1093964..1093988 (25 bp)
GAAGGCGTTATCATGGCGCTCTCCC
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--1130--891Chr10:1093966..1093990 (25 bp)
AGGCGTTATCATGGCGCTCTCCCAT
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--429--6791Chr10:1093970..1093994 (25 bp)
GTTATCATGGCGCTCTCCCATTTGC
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--1083--10411Chr10:1093971..1093995 (25 bp)
TTATCATGGCGCTCTCCCATTTGCC
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--940--2634Chr10:1094015..1094039 (25 bp)
AACCTTGCTCCGGTTCGGACGAGCG
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--820--8352Chr10:1094039..1094063 (25 bp)
GGCGGCGGCGTTACGCATCATGTCC
LOC_Os10g02780
OsAffx.18095.1.S1_x_at--270--8351Chr10:1094045..1094069 (25 bp)
GGCGTTACGCATCATGTCCTCCTTG
LOC_Os10g02780
Target Sequence 
CGGGCAACGCCGGCAGGTGGACATGGTGGCGACAGGCGGCGCAAGGGCGCGGGGTTGGCGGCGGCAGGCGGAGACGGGAG
GCGACGCGGCGGGGTGTGGGCCGCGGTGGTGAAGGCGGCGGCGACAGAGCCTGCGACCTCGGGCATCACCGGATCTGCCT
CGGCCATCGCCGGATCTGGAGCCAGGTACGGGAGAGGAGGCGGGTGGCGGCGGGGATGCAGTGGCGGCGGCAGGTGGCGG
GGATGCTGGCGAGGGCGGCGGGGATGCAGGCGCGGCTCTGGTGGTGGTGGCGCGTGGAGGATCGTGGAGGCGAGGCCGGC
GGTGTGGAGGCCGGTGCAGCCCGTGGAGATGCGGCCGGCGGCATGGCGTGGAGGCCGACGCTGGCGAAAGCCTTGCCGTG
CCTTTGGCCGGTTCGATGACGATGACGCCGTTGGCGCCGTTTCCCTTCTTGAAGGCGTTATCATGGCGCTCTCCCATTTG
CCCCACAAATCTCCAGGTGAAAACCTTGCTCCGGTTCGGACGAGCGGCGGCGGCGTTACGCATCATGTCCTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18095.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis