Browse Element(s) Details


Os.46737.3.S1_x_at

Description gb:NM_194617.1
DB_XREF= gi:37530593
TID=Os.46737.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46737 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative G-protein (OSJNBa0023I19.15), mRNA.
PROD=putative G-protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0281411/11G-protein alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46737.3.S1_x_at--1079--2551Chr10:1113652..1113676 (25 bp)
AACTGATCCGCATGAACTCCAAGGG
LOC_Os10g02814
Os.46737.3.S1_x_at--93--4911Chr10:1113688..1113712 (25 bp)
GCTTCAAGTGCCTCGGGATGCTGGA
LOC_Os10g02814
Os.46737.3.S1_x_at--857--611Chr10:1113705..1113729 (25 bp)
ATGCTGGAGGACATCCGTGCCATAA
LOC_Os10g02814
Os.46737.3.S1_x_at--253--371Chr10:1113726..1113750 (25 bp)
ATAATCTTCTGCATCTCGCTTGCGG
LOC_Os10g02814
Os.46737.3.S1_x_at--886--4911Chr10:1113743..1113767 (25 bp)
GCTTGCGGACTACGACCAAACATGG
LOC_Os10g02814
Os.46737.3.S1_x_at--33--551Chr10:1113801..1113825 (25 bp)
ATCGCCAGCCGGGATTTGTTTGAGG
LOC_Os10g02814
Os.46737.3.S1_x_at--40--8891Chr10:1113821..1113845 (25 bp)
TGAGGATGTGATCAGGCACCCTTCC
LOC_Os10g02814
Os.46737.3.S1_x_at--301--9331Chr10:1114009..1114033 (25 bp)
TCGCCGTGAAGTTTAAGGACCTCTA
LOC_Os10g02814
Os.46737.3.S1_x_at--80--5811Chr10:1114104..1114128 (25 bp)
GACGCCTTCAGGTACATCCGGGAGG
LOC_Os10g02814
Os.46737.3.S1_x_at--231--2751Chr10:1114149..1114173 (25 bp)
AAGAACAGCGATGCCGGCTATTGCA
LOC_Os10g02814
Os.46737.3.S1_x_at--355--71Chr10:1114168..1114192 (25 bp)
ATTGCAGCGCTGACGAGTCCTCGTA
LOC_Os10g02814
Target Sequence 
AACTGATCCGCATGAACTCCAAGGGGCTAACTGGAGGCTTCAAGTGCCTCGGGATGCTGGAGGACATCCGTGCCATAATC
TTCTGCATCTCGCTTGCGGACTACGACCAAACATGGGTGCAGAGCTCAGGAGAACCCTGCAACAAGATGATCGCCAGCCG
GGATTTGTTTGAGGATGTGATCAGGCACCCTTCCTTTGAGGACACCCCCTGTGTACTCCTCCTCAACAAGTACGACGCCT
TCGAGGAGAAGATCAGTAGGGTGCCACTGACAGTGTGCGAGTGGTTCGCTGACTTCAGCCCCGTCAGGCCTCACCACACC
AGCCAGACATCGCTGGCCAGCCACGCCTACTACTACGTCGCCGTGAAGTTTAAGGACCTCTACTCCTCCGTCGCTGATGG
CCGGAAGCTGTTTGTGTTCCAGACGAAGGCGCTGGAGCGGCGAACCGTCGACGACGCCTTCAGGTACATCCGGGAGGTGC
TGAGATGGGATGACGTGAAGAACAGCGATGCCGGCTATTGCAGCGCTGACGAGTCCTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46737.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis