Browse Element(s) Details


Os.46511.1.S1_at

Description gb:AK069721.1
DB_XREF= gi:32979745
TID=Os.46511.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative o-methyltransferase ZRP4 (OSJNBa0023I19.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O22, full insert sequence.
FL= gb:AK069721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0284010/11O-methyltransferase family protein, expressed
LOC_Os10g028801/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46511.1.S1_at--39--4292Chr10:1124280..1124304 (25 bp)
CCTATTCTAGTTCAGTAGCCTTGAG
LOC_Os10g02840
Os.46511.1.S1_at--425--771Chr10:1124204..1124228 (25 bp)
ATGTGCTATAGTATATTGTGCGTTG
LOC_Os10g02840
Os.46511.1.S1_at--385--7491Chr10:1124180..1124204 (25 bp)
GTGGGATGGCACAACTCATGCATGT
LOC_Os10g02840
Os.46511.1.S1_at--555--8511Chr10:1124174..1124198 (25 bp)
TGGCACAACTCATGCATGTCGTGGC
LOC_Os10g02840
Os.46511.1.S1_at--175--9611Chr10:1124165..1124189 (25 bp)
TCATGCATGTCGTGGCTTAAGTCTC
LOC_Os10g02840
Os.46511.1.S1_at--1136--4971Chr10:1124161..1124185 (25 bp)
GCATGTCGTGGCTTAAGTCTCGGGC
LOC_Os10g02840
Os.46511.1.S1_at--604--6971Chr10:1124130..1124154 (25 bp)
GTAGCCTCGATTTCCATTTCTATAT
LOC_Os10g02840
Os.46511.1.S1_at--1060--1671Chr10:1124128..1124152 (25 bp)
AGCCTCGATTTCCATTTCTATATTC
LOC_Os10g02840
Os.46511.1.S1_at--354--4051Chr10:1124123..1124147 (25 bp)
CGATTTCCATTTCTATATTCATCAC
LOC_Os10g02840
Os.46511.1.S1_at--1021--5491Chr10:1124085..1124109 (25 bp)
GAAAACCAAAAGCTACAAGGCAGTT
LOC_Os10g02840
Os.46511.1.S1_at--1032--2691Chr10:1124076..1124100 (25 bp)
AAGCTACAAGGCAGTTTGTAGCGCC
NONE
Target Sequence 
CCTATTCTAGTTCAGTAGCCTTGAGGCATGCGCGTGTTCACGTCGAGGCCATCATTTTTTGTTTTTCTGTTGTCATATGT
GCTATAGTATATTGTGCGTTGTGGGATGGCACAACTCATGCATGTCGTGGCTTAAGTCTCGGGCATATTGGTAGCCTCGA
TTTCCATTTCTATATTCATCACAATAAGAGGAAGAGAAAACCAAAAGCTACAAGGCAGTTTGTAGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis