Browse Element(s) Details


OsAffx.18097.1.S1_at

Description tigr:9638.m00193
TID=OsAffx.18097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0287011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18097.1.S1_at--291--5631Chr10:1144126..1144150 (25 bp)
GACATCCCAGTATATTTTGGGACTT
LOC_Os10g02870
OsAffx.18097.1.S1_at--778--1191Chr10:1144134..1144158 (25 bp)
AGTATATTTTGGGACTTTTGAATCT
LOC_Os10g02870
OsAffx.18097.1.S1_at--840--5691Chr10:1144146..1144170 (25 bp)
GACTTTTGAATCTTTATGCACTCTC
LOC_Os10g02870
OsAffx.18097.1.S1_at--592--5251Chr10:1144153..1144177 (25 bp)
GAATCTTTATGCACTCTCAATCTAT
LOC_Os10g02870
OsAffx.18097.1.S1_at--895--9551Chr10:1144156..1144180 (25 bp)
TCTTTATGCACTCTCAATCTATCCT
LOC_Os10g02870
OsAffx.18097.1.S1_at--637--10431Chr10:1144159..1144183 (25 bp)
TTATGCACTCTCAATCTATCCTTAA
LOC_Os10g02870
OsAffx.18097.1.S1_at--810--651Chr10:1144161..1144185 (25 bp)
ATGCACTCTCAATCTATCCTTAAAT
LOC_Os10g02870
OsAffx.18097.1.S1_at--331--9031Chr10:1144162..1144186 (25 bp)
TGCACTCTCAATCTATCCTTAAATA
LOC_Os10g02870
OsAffx.18097.1.S1_at--804--4411Chr10:1144197..1144221 (25 bp)
GCCAGTCCCTGAAGGAGGTGTGTTT
LOC_Os10g02870
OsAffx.18097.1.S1_at--850--6311Chr10:1145732..1145756 (25 bp)
GATGACACAATCGTTGACAACGAAT
LOC_Os10g02870
OsAffx.18097.1.S1_at--791--8951Chr10:1145746..1145770 (25 bp)
TGACAACGAATTGAAGATGAACCAG
LOC_Os10g02870
Target Sequence 
GACATCCCAGTATATTTTGGGACTTTTGAATCTTTATGCACTCTCAATCTATCCTTAAATAACCTTGAGGGGCCAGTCCC
TGAAGGAGGTGTGTTTGCAAATTCAAGCGATGTGTTCATCCAAGGAAATAAAGAGGTGTGTGAAGATGACACAATCGTTG
ACAACGAATTGAAGATGAACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis