Browse Element(s) Details


OsAffx.424.1.S1_at

Description gb:NM_194624.1
DB_XREF= gi:37530607
TID=OsAffx.424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Tam3-like transposon protein (OSJNBa0079B05.5), mRNA.
PROD=putative Tam3-like transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0291011/11hAT family dimerisation domain containing protein
LOC_Os07g4780010/11hAT family dimerisation domain containing protein
LOC_Os11g403608/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.424.1.S1_at--549--314Chr11:23563801..23563825 (25 bp)
ATACCTATTTTCGTGCTTTGTTTGA
LOC_Os11g40360
OsAffx.424.1.S1_at--594--2954Chr11:23564007..23564031 (25 bp)
AATGAGCCGGACACACCAAAATTTG
LOC_Os11g40360
OsAffx.424.1.S1_at--236--874Chr11:23564050..23564074 (25 bp)
AGGCCAATTCAACAAGATTCCCAAT
LOC_Os11g40360
OsAffx.424.1.S1_at--922--451Chr10:1170829..1170853 (25 bp)
ATCTCATTTGGCCTGTGATCTTTTG
LOC_Os10g02910
OsAffx.424.1.S1_at--153--6434Chr11:23564094..23564118 (25 bp)
GATCTTTTGGCAATTCCTATCACCT
LOC_Os11g40360
OsAffx.424.1.S1_at--305--394Chr11:23564112..23564136 (25 bp)
ATCACCTCAGTTGCCTCTGAATCAG
LOC_Os11g40360
OsAffx.424.1.S1_at--1026--3074Chr11:23564131..23564155 (25 bp)
AATCAGCCTTCAGTGCTGGTGGGCG
LOC_Os11g40360
OsAffx.424.1.S1_at--835--3894Chr11:23564146..23564170 (25 bp)
CTGGTGGGCGAACTCTAGATGACTT
LOC_Os11g40360
OsAffx.424.1.S1_at--445--6314Chr11:23564163..23564187 (25 bp)
GATGACTTTAGGACCTCACTAACCC
LOC_Os11g40360
OsAffx.424.1.S1_at--901--814Chr11:23564194..23564218 (25 bp)
ATGGTTGAGCGTCTTGTTTGTGCTA
NONE
OsAffx.424.1.S1_at--477--1434Chr11:23564384..23564408 (25 bp)
AGAACTTGGTGACCTATCTATTTCC
NONE
Target Sequence 
ATACCTATTTTCGTGCTTTGTTTGAAGAGTACAAGGAAATGTATACCCCAAAAGATAAGGCACCACAACCTACTGAATCT
GAATCTACAGCTGAAACCAGCAAAAGAGTGAGTTGTAGGTGGATGTCAGTAATTACTCAGCAACTTAACAGTGAGGGTGG
AAGTGGAACTATCAAATCTGAGGTAGACAAGTATCTATCAGAAGATAATGAGCCGGACACACCAAAATTTGACATTCTAA
AGTGGTGGAAGGCCAATTCAACAAGATTCCCAATATTATCTCATTTGGCCTGTGATCTTTTGGCAATTCCTATCACCTCA
GTTGCCTCTGAATCAGCCTTCAGTGCTGGTGGGCGAACTCTAGATGACTTTAGGACCTCACTAACCCCAAGAATGGTTGA
GCGTCTTGTTTGTGCTAATGATTGGCTTCGTGGAGGAAACTATGTTAGTGTTGAAGAGGACAGCGAACAAATGGCTTTGC
TTGAGGAAGAACTTGGTGACCTATCTATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis