Browse Element(s) Details


Os.46070.1.S1_x_at

Description gb:AK058386.1
DB_XREF= gi:32968404
TID=Os.46070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA2-NAM7 helicase family protein (OSJNBa0079B05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-H12, full insert sequence.
FL= gb:AK058386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0293011/11Helicase SEN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46070.1.S1_x_at--1137--5051Chr10:1178068..1178092 (25 bp)
GCAGCCCTGGACAGTCTTGGATGGA
LOC_Os10g02930
Os.46070.1.S1_x_at--666--1451Chr10:1178026..1178050 (25 bp)
AGAAGATGTGCACTTGGCTCTACCG
LOC_Os10g02930
Os.46070.1.S1_x_at--461--8971Chr10:1177945..1177969 (25 bp)
TGAAACCAAGCCTCTAGTGACAATG
LOC_Os10g02930
Os.46070.1.S1_x_at--989--2951Chr10:1177924..1177948 (25 bp)
AATGGGTTGTAAGCCTCAGGTGCCT
LOC_Os10g02930
Os.46070.1.S1_x_at--310--7711Chr10:1177872..1177896 (25 bp)
GGGTGCCTCATGGAACAAAGTTGCT
LOC_Os10g02930
Os.46070.1.S1_x_at--1058--8151Chr10:1177861..1177885 (25 bp)
GGAACAAAGTTGCTTCATGTCGTCA
LOC_Os10g02930
Os.46070.1.S1_x_at--983--991Chr10:1177819..1177843 (25 bp)
AGGATTTCCATATCTAGTGACCAGA
LOC_Os10g02930
Os.46070.1.S1_x_at--907--591Chr10:1177766..1177790 (25 bp)
ATGCCTGACATTGCAATGCTTGCTT
LOC_Os10g02930
Os.46070.1.S1_x_at--914--2411Chr10:1177663..1177687 (25 bp)
AAAAACAACTCTCACTGGCTCTAGA
LOC_Os10g02930
Os.46070.1.S1_x_at--783--4771Chr10:1177605..1177629 (25 bp)
GCTGCTGCAGCGAACATTCATGCTT
LOC_Os10g02930
Os.46070.1.S1_x_at--170--10131Chr10:1177530..1177554 (25 bp)
TATGACATAAGCTCCCTCTGTATAC
LOC_Os10g02930
Target Sequence 
GCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGG
TGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCT
CAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGGAACAAAGTTGCTTCATGTCGTCAGTGTTTCG
AAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATG
CTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCC
GGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACAT
TCATGCTTGATATGTCCTGTAGGATTAGTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTA
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46070.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis