Browse Element(s) Details


OsAffx.30249.1.S1_at

Description tigr:9638.m00200
TID=OsAffx.30249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0294011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02970OsAffx.20788.1.S1_at11/1110+1207807..1211176Leucine Rich Repeat family protein
LOC_Os10g02980Os.27263.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980Os.47973.1.S1_x_at11/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980OsAffx.32197.1.S1_x_at1/1110+1218215..1225920formin homology 2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30249.1.S1_at--133--5591Chr10:1198818..1198842 (25 bp)
GAAATTTTCCCTAAAGCGTGGTGAG
LOC_Os10g02940
OsAffx.30249.1.S1_at--922--2591Chr10:1198721..1198745 (25 bp)
AACGCTTTGGTTGGGCTACACCCAT
LOC_Os10g02940
OsAffx.30249.1.S1_at--1000--3371Chr10:1198676..1198700 (25 bp)
CAGCCTTTGGGTTTCTATATCGATG
LOC_Os10g02940
OsAffx.30249.1.S1_at--139--251Chr10:1198660..1198684 (25 bp)
ATATCGATGACCTTTTCCCGAAAGC
LOC_Os10g02940
OsAffx.30249.1.S1_at--341--9071Chr10:1198566..1198590 (25 bp)
TGCTTCCTCCTCAGATATTCATCGA
LOC_Os10g02940
OsAffx.30249.1.S1_at--806--5371Chr10:1198503..1198527 (25 bp)
GAAGAAGCGAGATCACCGCTCCTAC
LOC_Os10g02940
OsAffx.30249.1.S1_at--776--4211Chr10:1198488..1198512 (25 bp)
CCGCTCCTACGCAAAAGTGGTGATG
LOC_Os10g02940
OsAffx.30249.1.S1_at--613--2611Chr10:1198447..1198471 (25 bp)
AACCGCATGTTGACCAAGAGCTGTA
LOC_Os10g02940
OsAffx.30249.1.S1_at--965--2211Chr10:1198423..1198447 (25 bp)
ACAAGCGTCGTATGATGGATCTGGA
LOC_Os10g02940
OsAffx.30249.1.S1_at--1160--5351Chr10:1198392..1198416 (25 bp)
GAAGAGAACCATTGCCAGCGAAAAT
LOC_Os10g02940
OsAffx.30249.1.S1_at--8--2451Chr10:1198372..1198396 (25 bp)
AAAATGGACCATTGTCAGCGGCCCG
LOC_Os10g02940
Target Sequence 
GAAATTTTCCCTAAAGCGTGGTGAGATACCCCCATCTGCGCGGCCTGCTTCGCGTCCCCCTGACCCTGGAGGGGAATCCT
GGGCTGCCTGGGAGCCCAACGCTTTGGTTGGGCTACACCCATGCCGTCCCGCGTTCTCAGCCCAGCCTTTGGGTTTCTAT
ATCGATGACCTTTTCCCGAAAGCCTCAATGTCTCCAAGCCGCTGGCTGTGGGTGAGAAAAGGGAGGGGTCTCGATCCGGA
GCTAGGGTTCCCTGCTTCCTCCTCAGATATTCATCGATTTGGGGACAGTGCGAGGGAGATTTGGAGGGTTGAGGAGAAGA
AGCGAGATCACCGCTCCTACGCAAAAGTGGTGATGGATCGGCGTCCCCTGCAACCGCATGTTGACCAAGAGCTGTACAAG
CGTCGTATGATGGATCTGGATGCAGAGAAGAGAACCATTGCCAGCGAAAATGGACCATTGTCAGCGGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis